Nucleotide Sequences of 5' and 3' Non-coding Regions of Pepper Mild Mottle Virus Strain S RNA

Avila-Rincon, M.J.; Ferrero, Maxime; Alonso, E.; García-Luque, Isabel; Díaz-Ruíz, José Ramón

doi:10.1099/0022-1317-70-11-3025

Cited by 27 publications

(11 citation statements)

References 37 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…As with other tobamoviruses, the 5' NCR is devoid of G residues and has a short U (5 nt) track at its 5' end. While G residues appear in the leader sequence of TMGMV [38], they do not occur in other tobamoviruses [1,3,23,28,29,41]. The frequently repeated ACA triplet is found 11 times at the leader sequence of ORSV.…”

Section: Sequence Analysis Of Terminal Noncoding Regionsmentioning

confidence: 89%

See 1 more Smart Citation

The complete nucleotide sequence and genome organization of odontoglossum ringspot tobamovirus RNA

Ryu

Park

1995

Archives of Virology

View full text Add to dashboard Cite

The complete nucleotide sequence of the genomic RNA of odontoglossum ringspot tobamovirus (ORSV) was determined. The RNA genome of ORSV is 6618 nucleotides long and contains five open reading frames (ORFs 1 to 5) coding for proteins of M(r) 126 K, 181 K, 34 K, 18 K and 52 K, respectively. This is the longest RNA of the known viruses of the Tobamovirus genus. The sequences of the ORSV RNA encoded proteins exhibit high homology to the proteins of the members of the Tobamovirus genus. The genomic organization and sequence analysis showed that ORSV is more closely related to tobacco mild green mosaic virus (TMGMV), pepper mild mottle virus (PMMV), tomato mosaic virus (ToMV) and TMV than to cucumber green mottle mosaic virus (CGMMV) and sunn-hemp mosaic virus (SHMV).

show abstract

Section: Sequence Analysis Of Terminal Noncoding Regionsmentioning

confidence: 89%

“…This may reflect the size difference of the 3' NCRs between ORSV and other tobamoviruses. As in 3' NCRs of other tobamoviruses [3,33], the last 378 nt of ORSV appear to be highly structured. In total, nine pseudoknots and a tRNA-like structures are present at the 3' NCR of ORSV [35].…”

Section: Sequence Analysis Of Terminal Noncoding Regionsmentioning

confidence: 95%

The complete nucleotide sequence and genome organization of odontoglossum ringspot tobamovirus RNA

Ryu

Park

1995

Archives of Virology

View full text Add to dashboard Cite

show abstract

“…The last 180 nt ofPMMV-I RNA may be folded in the same possible structure as that previously proposed for other tobamoviruses [6,19,50,60] which consist of three pseudoknots preceeding the tRNA-like structure (Fig. 5 a).…”

Section: Coat Protein Gene and 3' Non-coding Region Of P M M V -Imentioning

confidence: 82%

“…The 3' end nucleotide sequences of both PMMV-I and P 11 RNAs were determined by the direct cleavage method [48] on fragments obtained by partial RNase T 1 digestion of the 3' end labelled RNAs as described [6]. DNA sequences were determined by the chemical degradation procedure [38] and the dideoxy chain termination method [54].…”

Section: Nucleotide Sequence Determination and Analysismentioning

confidence: 99%

The nucleotide sequence of the coat protein genes and 3′ non-coding regions of two resistance-breaking tobamoviruses in pepper shows that they are different viruses

García-Luque

Ferrero

Rodríguez

et al. 1993

Archives of Virology

Self Cite

View full text Add to dashboard Cite

The nucleotide sequence of the coat protein genes and 3' non-coding regions of two different resistance-breaking tobamoviruses in pepper have been determined. The deduced coat protein of an Italian isolate of pepper mild mottle virus (PMMV-I) consists of 156 amino acids and its 3' non-coding region is 198 nucleotides long. They have been found to be very similar in sequence and structure to those previously reported for a Spanish isolate (PMMV-S). In contrast, a Dutch isolate termed P 11 codes for a coat protein of 160 amino acids and its 3' non-coding region is 291 nucleotides long, which may have arisen by duplication. The nucleotide and the predicted coat protein amino acid sequence analysis show that this isolate should be considered as a new virus within the tobamovirus group. The term paprika mild mottle virus (PaMMV) is proposed.

show abstract

“…The three nucleotides (ACA) upstream and the three (GCA) downstream to the initiation codon are also well conserved. The 5' non-coding region of CGMMV-SH has 60 nucleotides and is 67 to 68~ similar to that of TMV vulgare, TMV-L and a Spanish isolate of pepper mild mottle virus (PMMV-S; Avila-Rincon et al, 1989) or TMGMV. The first nucleotide of the CGMMV-SH genome was found to be G, as are those of the other three (TMV vulgate, TMV-L and TMGMV).…”

Section: ' and 3" Non-coding Regionsmentioning

confidence: 99%

The complete nucleotide sequence of cucumber green mottle mosaic virus (SH strain) genomic RNA

Ugaki

Tomiyama

Kakutani

et al. 1991

Journal of General Virology

111

View full text Add to dashboard Cite

The complete nucleotide sequence of the genomic RNA of cucumber green mottle mosaic virus watermelon strain SH (CGMMV-SH) was determined using cloned cDNA. This sequence is 6421 nucleotides long containing at least four open reading frames, which correspond to 186K, 129K, 29K and 17.3K proteins. The 17.3K protein is the coat protein. Sequence analysis shows that CGMMV-SH is very closely related to another watermelon strain, CGMMV-W, although three amino acid substitutions in the 29K protein were found between these strains. The sequence was also compared to those of other tobamoviruses, tobacco mosaic virus (TMV) vulgare, TMV-L (a tomato strain) and tobacco mild green mosaic virus reported by other groups. It shows 55 to 56% identity with these viruses. The size and location of the open reading frames are very similar to those of TMV but the 129K and 186K proteins are composed of 1142 and 1646 amino acids, being larger than those of TMV by 27 and 31 amino acids, respectively. The deduced amino acid sequences of these proteins are highly homologous to those of TMV, especially in the readthrough downstream region of the 186K protein.

show abstract

Nucleotide Sequences of 5' and 3' Non-coding Regions of Pepper Mild Mottle Virus Strain S RNA

Cited by 27 publications

References 37 publications

The complete nucleotide sequence and genome organization of odontoglossum ringspot tobamovirus RNA

The complete nucleotide sequence and genome organization of odontoglossum ringspot tobamovirus RNA

The nucleotide sequence of the coat protein genes and 3′ non-coding regions of two resistance-breaking tobamoviruses in pepper shows that they are different viruses

The complete nucleotide sequence of cucumber green mottle mosaic virus (SH strain) genomic RNA

Contact Info

Product

Resources

About