Phytoplankton were isolated from natural, heterogeneous populations of part~cles in Boothbay Harbor, M a~n e , USA using flow cytornetry with cell sorting to measure true rates of nitrogenspecific uptake of 15N without the bias due to detritus, bactena or other heterotrophs that affects tradltional filtration techniques. After incubation under light or dark conditions with I5NH4+ or "NO3-, particles were either directly filtered or were sorted to isolate phytoplankton and then filtered for isotopic analysis. Nitrogen-specific (pN, t i m e ' ) and absolute uptake rates (mass volume-' time-l) of ammonium were greater for small (3-10 pm) phytoplankton than for larger (10-53 pm) phytoplankton, whereas the opposite was observed for uptake of nitrate. Accounting for pronounced diel variations in uptake from both nitrogen sources, algal growth rates were calculated to be 0.38 d-' on ammonium and 0.05 d -' on nitrate. The absolute rate of NH,+ uptake by all particles as assayed by filtration was approximately balanced by the summed rates of the 2 sorted fractions and the small ( < 3 ).]m) particles that were removed prior to sorting: phytoplankton represented only 50% of the total rate. In contrast, phytoplankton uptake of nitrate represented only about one-third of the total uptake, and the remaining fractions contributed only 10% leaving about 60% unaccounted for. Future applicat~ons of flow cytornetry with stable isotopes could be used to investigate diel variations in p~ and pc (carbon-specific uptake rates) and provide an estimate of phytoplankton growth rates.