Nutrient contents are important for plants. Lack of macronutrients causes plant damage. Several macronutrient deficiencies exhibit similar visual characteristics that are difficult for ordinary farmers to identify. Collaboration between Computer Vision technology and IoT has become a nondestructive method for nutrient monitoring and control, included in the hydroponic system. Computer vision plays a role in processing plant image data based on specific characteristics. However, the analysis of one characteristic cannot represent plant health. In addition, knowing the percentage of macronutrient deficiencies is also needed to support precision agriculture systems. Therefore, we propose a Multi Layer Perceptron architecture that can perform multi-tasks, namely, identification and estimation. In addition, the optimal architecture will also be sought based on the characteristics of the combination of three features in the form of texture, color, and leaf shape. Based on analysis and design, our proposed model has a high potential for identifying and estimating macronutrient deficiency at the same time as well and can be applied to support precision agriculture in Indonesia.