Phylogenetic and biogeographic analysis of the spear lobsters Linuparus (Decapoda: Palinuridae), with the description of a new species

Tsoi, Kwok Ho; Chan, Tin Yam; Chu, Ka Hou

doi:10.1016/j.jcz.2011.04.007

Cited by 17 publications

(6 citation statements)

References 45 publications

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“…The result (Figure 1) showed that L. trigonus was first clustered with Puerulus angulatus, and further clarified the phylogenetic relationships of the genus Linuparus in the family Palinuridae. It was consistent with the previous work by single mitochondrial fragments (Palero et al 2009;Tsoi et al 2011).…”

Section: Linuparus Trigonus; Mitochondrial Genome; Phylogenetic Analysissupporting

confidence: 93%

“…Early studies focused on its mechanism of sound production and the underwater sounds produced by it (Takemura 1971), its gametogenesis, reproductive cycle, and embryonic development (KIM 1977), and the diel feeding-periodicity and composition of its diets (Wassenberg and Hill 1989). Recently, the researchers have paid more attention to its fishery and reproductive biology including sex ratio, size at maturity, size-specific brood fecundity and egg size (Haddy et al 2003), maturation and spawning (Lee et al 2009), and its biogeography and phylogenetic relationships (Palero et al 2009;Tsoi et al 2011).…”

Section: Linuparus Trigonus; Mitochondrial Genome; Phylogenetic Analysismentioning

confidence: 99%

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The complete mitochondrial genome of Japanese spear lobster Linuparus trigonus (Von Siebold, 1824)

Liu

Yang

2020

Mitochondrial DNA Part B

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In this study, we first determined and characterized the complete mitochondrial genome of Japanese spear lobster Linuparus trigonus from South China Sea. The L. trigonus mitogenome is 15,949 bp long, and consists of 22 tRNA genes, 2 rRNA genes, 13 protein-coding genes (PCGs), and 1 control region. The nucleotide composition of L. trigonus mitogenome is significantly biased (A, G, T, and C was 32.80%, 12.01%, 32.63%, and 22.56%, respectively) with A þ T contents of 65.43%. Two PCGs used an unusual initiation codon, and most PCGs were terminated with an abnormal stop codon except ATP8. Three microsatellites were identified in L. trigonus mitogenome sequences. Phylogenetic tree showed that L. trigonus was first clustered with Puerulus angulatus.

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Section: Linuparus Trigonus; Mitochondrial Genome; Phylogenetic Analysissupporting

confidence: 93%

Section: Linuparus Trigonus; Mitochondrial Genome; Phylogenetic Analysismentioning

confidence: 99%

The complete mitochondrial genome of Japanese spear lobster Linuparus trigonus (Von Siebold, 1824)

Liu

Yang

2020

Mitochondrial DNA Part B

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“…NC_015607.1 (H. americanus) and NC_011243.1 (C. destructor) from GenBank are included as outgroup species. VRL, QLN, CHE, and VZG represent samples from Veraval, Kollam, Chennai, and Visakhapatnam, respectively. observed in genus Linuparus (Tsoi et al, 2011) for 12S; in genera like Jasus (Ovenden et al, 1997), Metanephrops (Chan et al, 2009), etc. for COI as well as 16SrRNA and in decapod reptantia (Ahyong & O'Meally, 2004) for 18S.…”

Section: Discussionmentioning

confidence: 96%

Molecular phylogeny of commercially important lobster species from Indian coast inferred from mitochondrial and nuclear DNA sequences

Jeena

Gopalakrishnan

Radhakrishnan

et al. 2015

Mitochondrial DNA Part A

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Lobsters constitute low-volume high-value crustacean fishery resource along Indian coast. For the conservation and management of this declining resource, accurate identification of species and larvae is essential. The objectives of this work were to generate species-specific molecular signatures of 11 commercially important species of lobsters of families Palinuridae and Scyllaridae and to reconstruct a phylogeny to clarify the evolutionary relationships among genera and species included in this study. Partial sequences were generated for all the candidate species from sampling sites along the Indian coast using markers like Cytochrome oxidase I (COI), 16SrRNA, 12SrRNA, and 18SrRNA genes, and analyzed. The genetic identities of widely distributed Thenus species along the Indian coast to be Thenus unimaculatus and the sub-species of Panulirus homarus to be P. homarus homarus were confirmed. Phylogeny reconstruction using the individual gene and concatenated mtDNA data set were carried out. The overall results suggested independent monophyly of Scyllaridae and Stridentes of Palinuridae. The interspecific divergence was found to be highest for the 12SrRNA compared with other genes. Significant incongruence between mtDNA and nuclear 18SrRNA gene tree topologies was observed. The results hinted an earlier origin for Palinuridae compared with Scyllaridae. The DNA sequence data generated from this study will aid in the correct identification of lobster larvae and will find application in research related to larval transport and distribution.

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“…Such an onshore towards offshore evolutionary pathway has already been revealed in many other decapod crustaceans by recent molecular studies (e.g . Feldmann 1986;Feldmann & Tshudy 1989;Feldmann & Schweitzer 2006;Chan et al 2009;Palero et al 2009;Tsang et al 2009;Tsoi et al 2011;Yang et al 2012).…”

Section: Origin and Dispersal Pathwaysmentioning

confidence: 73%

Molecular phylogeny of the deep‐sea penaeid shrimp genus Parapenaeus (Crustacea: Decapoda: Dendrobranchiata)

et al. 2014

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The commercial deep‐sea penaeid shrimp genus Parapenaeus contains 15 species, three subspecies and two forms in the Indo‐West Pacific and the Atlantic. Novel nucleotide sequence data from five different genes (COI, 16S, 12S, NaK and PEPCK) were collected to estimate phylogenetic relationships and taxonomic status amongst all but one subspecies in this genus. The phylogenetic results only support two of the four species groups previously proposed for this genus and indicate an evolution direction of the genital organs from simple to complex. The present results suggest that Parapenaeus originated in the shallow waters of the West Pacific with subsequent migration to the deep sea and the Atlantic. The molecular data reveal that there was probably misidentification of females between Parapenaeus australiensis and Parapenaeus ruberoculatus, with females previously assigned as P. australiensis likely being the females of P. ruberoculatus, while material identified as P. australiensis forma nodosa being the true P. australiensis females. On the other hand, Parapenaeus longipes forma denticulata truly represents a variation of the same species, while the subspecies Parapenaeus fissuroides indicus warrants a specific rank.

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Phylogenetic and biogeographic analysis of the spear lobsters Linuparus (Decapoda: Palinuridae), with the description of a new species

Cited by 17 publications

References 45 publications

The complete mitochondrial genome of Japanese spear lobster Linuparus trigonus (Von Siebold, 1824)

The complete mitochondrial genome of Japanese spear lobster Linuparus trigonus (Von Siebold, 1824)

Molecular phylogeny of commercially important lobster species from Indian coast inferred from mitochondrial and nuclear DNA sequences

Molecular phylogeny of the deep‐sea penaeid shrimp genus Parapenaeus (Crustacea: Decapoda: Dendrobranchiata)

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