An anomeric pair of the lysoglyceroganglioside 1-O-octadecyl-3-O-(N-acetyl)neuraminyl-N N snglycerol sodium salt was studied to see if sialic anomers were distinguishable by mass spectra. It was evident that, in the electrospray ionization and fast-atom bombardment product-ion spectra: (1) in the positive MS 2 product-ion spectrum, the -anomer showed an unexpected  aglycone-side sodiated sodium alkoxide ion, which was absent for the ␣-anomer; (2) in both ␣ polarities the -anomer showed dehydration much more easily than the  ␣-anomer; and (3) in ␣ the negative MS 2 product-ion spectrum, the -anomer also readily showed decarboxylation.  Our hypothesis is that, although several easily interconvertible conformations may be allowed, the one having the large aglycone in the equatorial orientation affects the collision-induced dissociation fragmentations. and MS 3 product-ion spectra of lysoglyceroganglioside anomers and seek to elucidate the differences based on stereochemical considerations. Such differences also apply to fast-atom bombardment mass spectrometry (FABMS).Sialic acid is one of the most important sugars for mammals. In normal life events, its conjugates, particularly gangliosides, are deeply involved in fertilization, development, cell-cell recognition, cell differentiation, and even in the programmed cell death. Gangliosides are also heavily related to cancer and other diseases. Studies of sialyl compounds are rapidly expanding these days in particular to meet the imminent threat of avian influenza infection, in which sialic acid may play a critical role.To study the structure-activity relationships, detailed structural information has to be clarified. Nuclear magnetic resonance (NMR) has served that purpose for years. However, soft ionization mass spectrometry often provides structural information parallel to or even exceeding what can be provided by NMR.Indeed, positional isomers and even linkage isomers in the same branching sugar unit are distinguishable by using mass spectrometry [5][6][7][8][9]. Among all, the most difficult isomer analysis is the distinction of stereoisomers. We previously reported the epimer distinction on N-acetyllactosamine-6,6 N N =-disulfate [10]. Here we report mass spectrometry of an anomeric pair of lysoglycerotype ganglioside. We selected product-ion mass spectrometry applying both ESI-and FAB-ionization methods, and we found that they showed similar tendencies with respect to their major fragmentation. However, ESI modes with high mass resolving power definitely produced more differences in the fragmentations and consumed less sample. We show here that mass spectrometric differences between anomers are not peculiar, but can be reasonably explained through stereochemical rationalizations.Yu and Ledeen reported in 1969, using an anomeric pair of methylketosides of N-acetylneuraminic acid N N that, on dehydration with dicyclohexylcarbodiimide in hot pyridine, the neuraminidase-resistant isomer gave two lactones, whereas the enzyme-susceptible anomer did not [11]. The...