The plant-colonizing Pseudomonas fluorescens strain SBW25 harbors a gene cluster (rsp) whose products show similarity to type III protein secretion systems found in plant and animal pathogens. Here we report a detailed analysis of the expression and regulation of the P. fluorescens rsp pathway, both in the phytosphere and in vitro. A combination of chromosomally integrated transcriptional reporter fusions, overexpressed regulatory genes, and specific mutants reveal that promoters controlling expression of rsp are actively transcribed in the plant rhizosphere but not (with the exception of the rspC promoter) in the phyllosphere. In synthetic medium, regulatory (rspL and rspR) and structural (rspU, plus the putative effector ropE) genes are poorly expressed; the rspC promoter is subject to an additional level of regulatory control. Ectopic expression of regulatory genes in wild-type and mutant backgrounds showed that RspR controls transcription of the alternate sigma factor, rspL, and that RspL controls expression of gene clusters encoding structural genes. Mutation of rspV did not affect RspR-mediated expression of rspU. A search for additional regulators revealed two candidates-one with a role in the conversion of alanine to pyruvate-suggesting that expression of rsp is partly dependent upon the metabolic status of the cell. Mutations in rsp regulators resulted in a significant reduction in competitive colonization of the root tips of sugar beet seedlings but also caused a marked increase in the lag phase of laboratory-grown cultures, indicating that rsp regulatory genes play a more significant general role in the function of P. fluorescens SBW25 than previously appreciated.The plant rhizosphere is a complex environment comprising organic matter and a plethora of microbes, some of which can affect plant health. Pathogens, such as Pythium ultimum, can hinder plant growth, whereas strains of Pseudomonas fluorescens, including P. fluorescens SBW25, can promote plant growth. The mechanism of plant growth promotion involves a combination of competition, antagonism of pathogens via the production of antimicrobial compounds, and induction of systemic resistance (15,16,31,34).To understand the interaction between P. fluorescens SBW25 and plants, SBW25 genes specifically activated in the plant environment were identified via a promoter trapping strategy (11,36). Approximately 100 rhizosphere-induced (rhi) genes have been identified and categorized into six groups: nutrient acquisition, stress response, attachment and surface colonization, antibiotic production, secretion, and unknown. One rhi gene (rhi-18) is hrcC (redesignated rscC), whose product is a component of a type III protein secretion system (TTSS) termed Rsp (33, 36) (Fig. 1).The P. fluorescens SBW25 rsp cluster exhibits a high level of synteny to the group I TTSS clusters of Pseudomonas syringae pv. tomato DC3000 and Erwinia amylovora and is genetically most similar to the P. syringae cluster. The cluster is organized into three putative transcriptional units...