Data, information, and knowledge processing systems, in the domain of healthcare are currently plagued by the heterogeneity at various levels. Current solutions, have focused on developing a standard based, manual intervention mechanism, which requires a large amount of human resource and necessitate realignment of existing systems. State-of-the-art methodologies in the field of natural language processing and machine learning, can help to partially automate this process, reducing the resource requirements and providing a relatively good multi-class based classification algorithm. We present a novel methodology for bridging the gap between various healthcare data management solutions by leveraging the strength of transformer based machine learning models, to create mappings between the data elements. Additionally, the annotated data, collected against five medical schemas and labeled by 4 annotators is made available for helping future researchers. Our results indicate, that for biased, dependent multi-class text classification, RoBERTa shows the best performance, achieving a Cohen's kappa score of 0.47 and Matthews Correlation Coefficient (MCC) score of 0.48, with human annotated data.