The mammalian response to endoplasmic reticulum (ER) stress dynamically affects all layers of gene expression regulation. We quantified transcript and protein abundance along with footprints of ribosomes and non-ribosomal proteins for thousands of genes in cervical cancer cells responding to treatment with tunicamycin or hydrogen peroxide over an eight hour time course. We identify shared and stress-specific significant regulatory events at the transcriptional and post-transcriptional level and at different phases of the experiment. ER stress regulators increase transcription and translation at different times supporting an adaptive response. ER stress also induces translation of genes from serine biosynthesis and one-carbon metabolism indicating a shift in energy production. Discordant regulation of DNA repair genes suggests transcriptional priming in which delayed translation fine-tunes the early change in the transcriptome. Finally, case studies on stress-dependent alternative splicing and protein-mRNA binding demonstrate the ability of this resource to generate hypotheses for new regulatory mechanisms.have substantial contributions to the ER stress response, but show different temporal patterns (Kershaw et al., 2015;Liu et al., 2017;Quirós et al., 2017 ;Cheng et al., 2015 ;Guan et al., 2014) .Here, we provide one of the most comprehensive assessments of the gene expression response to ER stress available to date. We collected replicate samples at four time points (0, 1, 4, and 8 hours) from human cervical cancer cells treated with tunicamycin. Using RNA-seq and mass spectrometry, we determined the complete RNA and protein concentrations for >7,000 genes in the core dataset and for >14,000 genes in the extended data. Further, using ribosome footprinting and protein-occupancy profiling, we mapped the binding of ribosomes and non-ribosomal proteins to mRNA, which informs on translation as well as several aspects of RNA processing, respectively. Finally, we applied the same technologies to cells treated with hydrogen peroxide to elicit oxidative stress. ER stress and the UPR are tightly linked to the oxidative stress response, largely due to reactive oxygen species (ROS) produced during protein folding in the ER (Malhotra and Kaufman, 2007) . In addition, eIF2α phosphorylation and translation inhibition are part of Integrated Stress Response, which is conserved across eukaryotes and triggered by a variety of stresses (Dickhout et al., 2012;Harding et al., 2003;Pakos-Zebrucka et al., 2016) . As the data rely on the coordinated change of two molecule types, e.g. a change in ribosome-bound mRNAs depends both on the number of translating ribosomes as well as the mRNA abundance, we have adapted our Protein Expression Control Analysis tool (PECA) (Teo et al., 2014(Teo et al., , 2018 to deconvolute the measurements and extract significant regulatory events per gene, per time point, and per regulatory level. Therefore, the presented data explores both shared and stress-specific regulation, it describes both the early and...