Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae)

Kocher, Arthur; Kamilari, Maria; Lhuillier, Émeline; Coissac, Éric; Péneau, Julie; Chave, Jérôme; Murienne, Jérôme

doi:10.1016/j.gene.2014.09.033

Cited by 49 publications

(41 citation statements)

References 88 publications

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“…However, this result is different from the results of [13] and [40] using mitogenomic data, where Lygaeoidea and Coreoidea are sister. Within Pentatomoidea, all analyses strongly support a relationship of (Urostylididae + (Plataspidae + (Pentatomidae + (Cydnidae + (Dinidoridae + Tessaratomidae))))), which is consistent with previous studies based on morphological and molecular data [8, 10, 11, 46]. Furthermore, the monophyly of Pentatomidae is also strongly supported in all analyses, and a phylogenetic relationship of (Carpocorini, (Cappaeini, (Strachiini + Pentatomini))) within Pentatominae is recognized in most analyses (Fig.…”

Section: Resultssupporting

confidence: 88%

“…The clades have previously been established in Pentatomomorpha as monophyletic groups. Incongruent phylogenetic relationships within Eutrichophora (Pyrrhocoroidea, Lygaeoidea, and Coreoidea) have been frequently observed in other molecular studies [13, 40, 43, 46]. Pyrrhocoroidea and Coreoidea are consistently recovered as sister, except in a BI analysis of PCG123RT, and this is congruent with traditional taxonomic hypotheses based on morphology [14] and other molecular phylogenetic studies [24, 43, 46].…”

Section: Resultssupporting

confidence: 81%

“…Incongruent phylogenetic relationships within Eutrichophora (Pyrrhocoroidea, Lygaeoidea, and Coreoidea) have been frequently observed in other molecular studies [13, 40, 43, 46]. Pyrrhocoroidea and Coreoidea are consistently recovered as sister, except in a BI analysis of PCG123RT, and this is congruent with traditional taxonomic hypotheses based on morphology [14] and other molecular phylogenetic studies [24, 43, 46]. However, this result is different from the results of [13] and [40] using mitogenomic data, where Lygaeoidea and Coreoidea are sister.…”

Section: Resultsmentioning

confidence: 76%

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Comparative mitogenomic analysis of the superfamily Pentatomoidea (Insecta: Hemiptera: Heteroptera) and phylogenetic implications

et al. 2015

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BackgroundInsect mitochondrial genomes (mitogenomes) are the most extensively used genetic marker for evolutionary and population genetics studies of insects. The Pentatomoidea superfamily is economically important and the largest superfamily within Pentatomomorpha with over 7,000 species. To better understand the diversity and evolution of pentatomoid species, we sequenced and annotated the mitogenomes of Eurydema gebleri and Rubiconia intermedia, and present the first comparative analysis of the 11 pentatomoid mitogenomes that have been sequenced to date.ResultsWe obtained the complete mitogenome of Eurydema gebleri (16,005 bp) and a nearly complete mitogenome of Rubiconia intermedia (14,967 bp). Our results show that gene content, gene arrangement, base composition, codon usage, and mitochondrial transcription termination factor sequences are highly conserved in pentatomoid species, especially for species in the same family. Evolutionary rate analyses of protein-coding genes reveal that the highest and lowest rates are found in atp8 and cox1 and distinctive evolutionary patterns are significantly correlated with the G + C content of genes. We inferred the secondary structures for two rRNA genes for eleven pentatomoid species, and identify some conserved motifs of RNA structures in Pentatomidea. All tRNA genes in pentatomoid mitogenomes have a canonical cloverleaf secondary structure, except for two tRNAs (trnS1 and trnV) which appear to lack the dihydrouridine arm. Regions that are A + T-rich have several distinct characteristics (e.g. size variation and abundant tandem repeats), and have potential as species or population level molecular markers. Phylogenetic analyses based on mitogenomic data strongly support the monophyly of Pentatomoidea, and the estimated phylogenetic relationships are: (Urostylididae + (Plataspidae + (Pentatomidae + (Cydnidae + (Dinidoridae + Tessaratomidae))))).ConclusionsThis comparative mitogenomic analysis sheds light on the architecture and evolution of mitogenomes in the superfamily Pentatomoidea. Mitogenomes can be effectively used to resolve phylogenetic relationships of pentatomomorphan insects at various taxonomic levels. Sequencing more mitogenomes at various taxonomic levels, particularly from closely related species, will improve the annotation accuracy of mitochondrial genes, as well as greatly enhance our understanding of mitogenomic evolution and phylogenetic relationships in pentatomoids.Electronic supplementary materialThe online version of this article (doi:10.1186/s12864-015-1679-x) contains supplementary material, which is available to authorized users.

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Section: Resultssupporting

confidence: 88%

Section: Resultssupporting

confidence: 81%

Section: Resultsmentioning

confidence: 76%

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Comparative mitogenomic analysis of the superfamily Pentatomoidea (Insecta: Hemiptera: Heteroptera) and phylogenetic implications

et al. 2015

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“…This ''genome-skimming'' approach has now been successfully applied to sequence complete mitochondrial genomes from a wide variety of animals including nematodes (Besnard et al, 2014), insects (Cally et al, 2014;Kocher et al, 2014Kocher et al, , 2015 and pigeons (Besnard et al, 2015). A relatively shallow sequencing allows us to easily retrieve the high copy fractions of the genomes, including the mitochondrial DNA.…”

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confidence: 99%

PCR-free shotgun sequencing of the stone loach mitochondrial genome ( Barbatula barbatula )

Murienne

Jéziorski

Holota

et al. 2015

Mitochondrial DNA Part A

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The complete mitochondrial genome of the stone loach Barbatula barbatula (Linnaeus, 1758) (Actinopterygii: Cypriniformes: Nemacheilidae) has been sequenced using a genome-skimming approach on an Illumina Hiseq 2500 platform. The mitochondrial genome of B. barbatula was determined to be 16,630 bp long and presents an organization typical of vertebrate mitogenomes. The mean coverage was 82× with a minimum coverage of 33× for the control region and 52× for the remaining part of the genome. A phylogenetic analysis of the Nemacheilidae family shows the monophyly of the Barbatula genus with strong support.

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“…Paired-end reads of 125 nucleotides were collected using the TruSeq SBS Kit v.3 (200 cycles). The mitochondrial genomes were assembled based on a genome-walking approach (Cally et al, 2014;Kocher et al, 2014Kocher et al, , 2015aMurienne et al, 2015).…”

mentioning

confidence: 99%

Complete mitochondrial genome of the gray mouse lemur, Microcebus murinus (Primates, Cheirogaleidae)

Lecompte

Crouau‐Roy

Aujard

et al. 2015

Mitochondrial DNA Part A

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We report the high-coverage complete mitochondrial genome sequence of the gray mouse lemur Microcebus murinus. The sequencing has been performed on an Illumina Hiseq 2500 platform, with a genome skimming strategy. The total length of this mitogenome is 16 963 bp, containing 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 1 non-coding region (D-loop region). The genome organization, nucleotide composition and codon usage are similar to those reported from other primate's mitochondrial genomes. The complete mitochondrial genome sequence reported here will be useful for comparative genomics studies in primates.

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Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae)

Cited by 49 publications

References 88 publications

Comparative mitogenomic analysis of the superfamily Pentatomoidea (Insecta: Hemiptera: Heteroptera) and phylogenetic implications

Comparative mitogenomic analysis of the superfamily Pentatomoidea (Insecta: Hemiptera: Heteroptera) and phylogenetic implications

PCR-free shotgun sequencing of the stone loach mitochondrial genome ( Barbatula barbatula )

Complete mitochondrial genome of the gray mouse lemur, Microcebus murinus (Primates, Cheirogaleidae)

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