The altitudinal distribution, morphology, phenology and allozyme polymorphism at 12 loci were studied in diploid and tetraploid populations of Lotus growing at over 1800 m in the French Alps to clarify relationships between these cytotypes. In general, diploids occurred at higher elevation than tetraploids, although some sites at intermediate elevation contained both cytotypes, diploids predominating in the upper part and tetraploids in the lower part of the contact area. Evidence for an autopolyploid origin of the tetraploids was provided by tetrasomic inheritance at two enzyme loci, although no tetravalents were observed at meiosis. Diploid and tetraploid plants shared morphological traits distinct from those of other Lotus species and showed differences in size, which may be attributable to chromosome doubling. The diploid cytotype, L. alpinus, may thus be the ancestor of the Alpine tetraploids. Both cytotypes showed nearly identical suites of alleles at all loci and very similar genetic parameters, except for heterozygosity, which was higher in the tetraploid plants. However, the occurrence of few alleles specific to each ploidy level indicated limited gene flow between cytotypes, probably as a result of spatial segregation and variation in flowering time. Of the individuals in a tetraploid population, 25% showed morphological traits similar to those observed in L. corniculatus, suggesting genetic introgression between the two tetraploid species.