Microbial and host cell interactions stimulate rabbit B cells to diversify the primary antibody repertoire in gut-associated lymphoid tissues (GALT). B cells at the base of appendix follicles begin proliferating and diversifying their V-(D)-J genes around 1 week of age, ∼5 days after B cells first begin entering appendix follicles, To gain insight into the microbial and host cell interactions that stimulate B cells to diversify the primary antibody repertoire, we analyzed B cell trafficking within follicles during the first week of life. We visualized B cells, as well as chemokines that mediate B cell homing in lymphoid tissues, by in situ hybridization, and examined B cell chemokine receptor expression by flow cytometry. We found that B cells were activated, and began downregulating their BCRs, well before a detectable B cell proliferative region appeared at the follicle base. The proliferative region was similar to germinal center dark zones, in that it exhibited elevated CXCL12 mRNA expression, and B cells that upregulated CXCR4 mRNA in response to signals acquired from select intestinal commensals localized in this region. Our results suggest that, after entering appendix follicles, B cells home sequentially to the FAE, the FDC network, the B cell:T cell boundary and, ultimately, the base of the follicle, where they enter a proliferative program and diversify the primary antibody repertoire.