Protease Ki activity initiates the degradation of the Kunitz soybean trypsin inhibitor (KSTI) during germination and early seedling growth. This enzyme was purified nearly 1300-fold from the cotyledons of 4-day-old soybean (Glycine max [L.] Merrill) seedlings. Protease Ki is a cysteine protease with a molecular weight of approximately 29,000. It cleaves the native form of KSTI, Ti, to Tilm, the same modified form observed in vivo. In addition to attacking KSTI, protease K1 is also active toward the major Bowman-Birk soybean trypsin inhibitor, as well as the a, a', and , subunits of soybean iB-conglycinin. The properties and temporal variation of protease KI during germination indicate that it is responsible for initiating the degradation of both KSTI and Bowman-Birk soybean trypsin inhibitor in the soybean cotyledon.During germination the reserve proteins of the legume seed are hydrolyzed to yield amino acids needed by the seedling until it becomes established as a photosynthetic autotroph. We previously demonstrated that the Kunitz and BowmanBirk-type trypsin inhibitors of legume seeds are also subjected to hydrolysis during germination and seedling growth (17,20,21). The soybean Glycine max (L.) Merrill contains both KSTI3 and BBSTI, each of which is initially cleaved by a limited specific proteolysis. In the soybean cv Amsoy 71, which contains the Tia variant of KSTI, this initial proteolysis removes the five carboxyl-terminal residues (Asp-Lys-GluSer-Leu) of KSTI-Tia to produce . This proteolysis is catalyzed by protease K1. Protease Kl is essentially absent from dry soybeans but increases greatly during germination, peaking at day 4 of growth (22). The degradation of the major soybean Bowman-Birk-type inhibitor, BBSTI-E, similarly involves an initial truncation at the carboxyl terminus to produce BBSTI-D (12). This reaction is catalyzed by protease B1, which exhibits a temporal variation in activity similar to that of protease K1. Both of these inhibitor-degrading activities are distinct from another activity in the seedling cotyledon, protease G1, which specifically degrades the acidic chains of the storage globulin glycinin (22).