The in situ activity and distribution of heterotrophic and nitrifying bacteria and their potential interactions were investigated in a full-scale, two-section, trickling filter designed for biological degradation of volatile organics and NH 3 in ventilation air from pig farms. The filter biofilm was investigated by microsensor analysis, fluorescence in situ hybridization, quantitative PCR, and batch incubation activity measurements. In situ aerobic activity showed a significant decrease through the filter, while the distribution of ammonia-oxidizing bacteria (AOB) was highly skewed toward the filter outlet. Nitrite oxidation was not detected during most of the experimental period, and the AOB activity therefore resulted in NO 2 ؊ , accumulation, with concentrations often exceeding 100 mM at the filter inlet. The restriction of AOB to the outlet section of the filter was explained by both competition with heterotrophic bacteria for O 2 and inhibition by the protonated form of NO 2 ؊ , HNO 2 . Product inhibition of AOB growth could explain why this type of filter tends to emit air with a rather constant NH 3 concentration irrespective of variations in inlet concentration and airflow.Emissions of NH 3 , odorous organic gasses, and dust from pig facilities cause significant problems for neighbors and the surrounding natural environment. In Denmark, swine production accounts for 34% of the total atmospheric NH 3 emission, of which 50% originates from pig house emissions (19). Furthermore, multiple volatile and very odorous organic compounds are emitted with animal house exhaust air and constitute a severe nuisance in residential areas (16,31). While biofilters based on wood chips, compost, and peat have proven efficient in removing complex mixtures of volatile organic compounds (VOC) from piggery exhaust air, biotrickling filters have been shown to be efficient in both odor and NH 3 removal (30). In these filters, airborne VOC and NH 3 are taken up by an irrigated biofilm and oxidized by organoheterotrophic and nitrifying bacteria, respectively, resulting in the production of CO 2 , NO 2 Ϫ or NO 3 Ϫ , and microbial biomass (43). The nitrification process, which comprises the two-step oxidation of NH 3 via NO 2 Ϫ to NO 3 Ϫ , is catalyzed by ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea and by nitriteoxidizing bacteria (NOB), respectively (22, 23). However, in many biotrickling filters, NOB activity seems to be absent, resulting in NO 2 Ϫ being the end product of nitrification (29). Waste products often accumulate in biotrickling filters, as the water is recycled many times to minimize wastewater discharge. In particular, NO 2 Ϫ may accumulate to concentrations above 100 mM (29), resulting in high levels of free nitrous acid (FNA, or HNO 2 ), which is inhibitory to many microorganisms (2, 40, 50). As a result of an overall countercurrent air-water flow, FNA, VOC, and NH 3 concentrations are expected to decrease from the filter air inlet toward the outlet, potentially promoting a gradient of microbial p...