Structural features and phylogenetic implications of four new mitogenomes of Centrotinae (Hemiptera: Membracidae)

Hu, Kai; Yuan, Feng; Dietrich, Christopher H.; Yuan, Xiang Qun

doi:10.1016/j.ijbiomac.2019.08.064

Cited by 16 publications

(15 citation statements)

References 54 publications

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“…5 and 6 ). Our results support the view that treehoppers originated from Cicadellidae and further confirm that Cicadellidae is a paraphyletic group, which is also supported by many previous studies ( Du, Dai & Dietrich, 2017a ; Du, Dietrich & Dai, 2019 ; Hu et al, 2019 ; Mao, Yang & Bennett, 2016 ; Song, Cai & Li, 2017 ; Wang et al, 2018 ; Wang et al, 2020a ; Wang et al, 2020b ; Yu et al, 2017 ). All analyses clearly support the monophyletic relationship of the 10 subfamilies within Cicadellidae and confirm that Iassinae and Coelidiinae as well as Megophthalminae and treehoppers are sister groups ( Figs.…”

Section: Resultssupporting

confidence: 92%

Mitogenomics of five Olidiana leafhoppers (Hemiptera: Cicadellidae: Coelidiinae) and their phylogenetic implications

Wang¹,

Wang²,

Dai³

2021

PeerJ

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Similar morphological characteristics and limited molecular data of Olidiana resulted in their unknown phylogenetic statuses and equivocal relationships. To further understand the genus Olidiana, we sequenced and annotated five Olidiana complete mitochondrial genomes (mitogenomes). Our results show that Olidiana mitogenomes range from 15,205 bp to 15,993 bp in length and include 37 typical genes (13 protein-coding genes, 22 tRNAs, and 2 rRNAs) and a control region. Their nucleotide composition, codon usage, features of control region, and tRNA secondary structures are similar to other members of Cicadellidae. We constructed the phylogenetic tree of Cicadellidae using the maximum likelihood (ML) and Bayesian inference (BI) methods based on all valid mitogenome sequences. The most topological structure of the obtained phylogenetic tree is consistent. Our results support the monophyletic relationships among 10 subfamilies within Cicadellidae and confirm Iassinae and Coelidiinae to be sister groups with high approval ratings. Interestingly, Olidiana was inferred as a paraphyletic group with strong support via both ML and BI analyses. These complete mitogenomes of five Olidiana species could be useful in further studies for species diagnosis, evolution, and phylogeny research within Cicadellidae.

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Section: Resultssupporting

confidence: 92%

Mitogenomics of five Olidiana leafhoppers (Hemiptera: Cicadellidae: Coelidiinae) and their phylogenetic implications

Wang¹,

Wang²,

Dai³

2021

PeerJ

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“…In agreement with previous studies [1,8-10], our phylogenetic analyses based on three different datasets using both BI and ML methods showed a strong support for the monophyly of Deltocephalinae. The present analyses consistently recovered Macrostelini as sister to the remaining tribes of this subfamily (PP = 100%, BS = 100), as have previous phylogenetic studies [28,34]. Additionally, Drabescini was recovered as monophyletic with These results provide a well-resolved phylogenetic topology for Deltocephalinae with moderate to high support for most branches.…”

Section: Phylogenetic Relationshipssupporting

confidence: 84%

Characterization of the Complete Mitochondrial Genome of Drabescus ineffectus and Roxasellana stellata (Hemiptera: Cicadellidae: Deltocephalinae: Drabescini) and Their Phylogenetic Implications

Zhang

2020

Insects

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To explore the mitogenome characteristics and shed light on the phylogenetic relationships and molecular evolution of Drabescini species, we sequenced and analyzed the complete mitochondrial genome of two species including Drabescus ineffectus and Roxasellana stellata. The complete mitogenomes of D. ineffectus and R. stellata are circular, closed and double-stranded molecules with a total length of 15744 bp and 15361 bp, respectively. These two newly sequenced mitogenomes contain the typical 37 genes. Most protein-coding genes (PCGs) began with the start codon ATN and terminated with the terminal codon TAA or TAG, with an exception of a special initiation codon of ND5, which started with TTG, and an incomplete stop codon T-- was found in the Cytb, COX2, ND1 and ND4. All tRNAs could be folded into the canonical cloverleaf secondary structure except for the trnS1, which lacks the DHU arm and is replaced by a simple loop. The multiple tandem repeat units were found in A + T-control region. The sliding window, Ka/Ks and genetic distance analyses indicated that the ATP8 presents a high variability and fast evolutionary rate compared to other PCGs. Phylogenetic analyses based on three different datasets (PCG123, PCG12R and AA) using both Bayesian inference (BI) and maximum likelihood (ML) methods showed strong support for the monophyly of Drabescini.

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“…Different numbers and sizes of non-coding regions are observed in metazoan mitogenomes, which results in variable size mitogenome between species [45]. Of the non-coding regions, the largest one is usually thought to be the control region, which contains signals for regulation and initiation of mitochondrial DNA transcription and replication [46,47].…”

Section: Non-coding Regionsmentioning

confidence: 99%

Comparative Mitogenomic Analysis of Heptageniid Mayflies (Insecta: Ephemeroptera): Conserved Intergenic Spacer and tRNA Gene Duplication

Lei

et al. 2021

Insects

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Large intergenic spacers and tRNA gene duplications have been reported in several insect groups, although little is known about mitogenomes of mayflies. Here, we determined complete mitogenomes of ten heptageniid species and systemically analyzed their mitogenomic features. Both a conserved intergenic spacer (IGS) and trnM duplication were detected in those mitogenomes. The IGS, which was observed in heptageniids, could be further folded into a stable stem–loop structure. The tRNA gene duplication was found in almost all analyzed mitogenomes, and a unique gene block trnI-trnM-trnQ-trnM-ND2 was also discovered. Our analysis demonstrates that the heptageniid gene arrangement pattern can be explained by the tandem duplication-random loss (TDRL) model. Phylogenetic analyses using both Bayesian inference (BI) and maximum likelihood (ML) methods based on the nucleotide and amino acid sequence data recovered the genus Epeorus as monophyletic with strong support. Our results provide a better understanding of mitogenomic evolution in Heptageniidae, as well as novel molecular markers for species identification of mayflies.

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Structural features and phylogenetic implications of four new mitogenomes of Centrotinae (Hemiptera: Membracidae)

Cited by 16 publications

References 54 publications

Mitogenomics of five Olidiana leafhoppers (Hemiptera: Cicadellidae: Coelidiinae) and their phylogenetic implications

Mitogenomics of five Olidiana leafhoppers (Hemiptera: Cicadellidae: Coelidiinae) and their phylogenetic implications

Characterization of the Complete Mitochondrial Genome of Drabescus ineffectus and Roxasellana stellata (Hemiptera: Cicadellidae: Deltocephalinae: Drabescini) and Their Phylogenetic Implications

Comparative Mitogenomic Analysis of Heptageniid Mayflies (Insecta: Ephemeroptera): Conserved Intergenic Spacer and tRNA Gene Duplication

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