2018
DOI: 10.3389/fncel.2018.00098
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Studying Axon-Astrocyte Functional Interactions by 3D Two-Photon Ca2+ Imaging: A Practical Guide to Experiments and “Big Data” Analysis

Abstract: Recent advances in fast volumetric imaging have enabled rapid generation of large amounts of multi-dimensional functional data. While many computer frameworks exist for data storage and analysis of the multi-gigabyte Ca2+ imaging experiments in neurons, they are less useful for analyzing Ca2+ dynamics in astrocytes, where transients do not follow a predictable spatio-temporal distribution pattern. In this manuscript, we provide a detailed protocol and commentary for recording and analyzing three-dimensional (3… Show more

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Cited by 16 publications
(10 citation statements)
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“…Conventional 2D imaging of cells using fluorescent microscopes presents several problems including background noise arising from scattering, photobleaching, and an inability to capture cells from various planes (Gualda et al, 2014; Jonkman & Brown, 2015; Savtchouk, Carriero, & Volterra, 2018), thus leading to a reduction in the volume and total number of cells imaged. In contrast, confocal imaging provides control in choosing focal depth, while allowing higher spatial resolution through sampling larger number of z‐stacks (Jonkman & Brown, 2015).…”
Section: Discussionmentioning
confidence: 99%
See 1 more Smart Citation
“…Conventional 2D imaging of cells using fluorescent microscopes presents several problems including background noise arising from scattering, photobleaching, and an inability to capture cells from various planes (Gualda et al, 2014; Jonkman & Brown, 2015; Savtchouk, Carriero, & Volterra, 2018), thus leading to a reduction in the volume and total number of cells imaged. In contrast, confocal imaging provides control in choosing focal depth, while allowing higher spatial resolution through sampling larger number of z‐stacks (Jonkman & Brown, 2015).…”
Section: Discussionmentioning
confidence: 99%
“…To overcome these limitations with existing imaging modalities, we performed 3D imaging using resonance scanning, which permitted imaging of thick samples (Figure S5) and the visualization of cells at various depths. Resonance scanning also enabled imaging at higher speeds than possible with normal scanning (Figure S3), thus possibly reducing photobleaching and phototoxicity (Savtchouk et al, 2018). Though traditional laser scanning is typically limited in acquisition speed, the use of resonance mode enabled faster scanning because the galvanometer mirrors scanned back and forth (Jonkman & Brown, 2015).…”
Section: Discussionmentioning
confidence: 99%
“…Another potential caveat of Ca 2+ imaging in slices was that the initiation points of Ca 2+ events may be located outside of the focal plane. This issue can be addressed in the future experiments with emerging technologies such as three-dimensional Ca 2+ imaging (Savtchouk, Carriero, & Volterra, 2018).…”
Section: Discussionmentioning
confidence: 99%
“…Beyond characterizing the functionality of neurons, the ability to analyze interactions of neurons to glia is paramount to faithfully Kim et al 2018) and ischemic stroke (Hersh and Yang 2018). Powerful tools such as genetically encoded calcium reporters have allowed for the rapid analysis of signaling within astrocyte populations in response to neuronal activity (Savtchouk et al 2018). Apart from rapid signaling, characterizing the metabolic outputs resulting from neuron:astrocyte interaction has been studied in 3D substrates, specifically the monitoring of glucose and acetate metabolism (Simao et al 2016).…”
Section: Cell-cell Interactionsmentioning
confidence: 99%