SummaryAlginate‐based encapsulation is an effective probiotics delivery system in the intestine. However, due to calcium ions and gastric juice damaging to cell wall/membrane integrity during freeze‐drying and gastrointestinal ingestion, lots of cell loss their viability. This study, taking Lactiplantibacillus plantarum grx16 as an example, indicated that co‐encapsulation of cryoprotectants and porous starch within calcium alginate capsules could combinedly improve viability of probiotics encapsulated. Compared with calcium alginate‐protectant capsule (CAC‐Pro) (50.67%), combination of porous starch increased the encapsulation rate of PS0.8‐CAC‐Pro capsules to 82.68%. Meanwhile, the death rate constants of PS0.8‐CAC‐Pro capsules decreased by 31.3% (‐20 °C), 13.5% (4 °C), and 7.5% (25 °C) respectively. The survival rate of PS0.8‐CAC‐Pro capsules was 81.94% after continuous simulated gastrointestinal digestion, which was significantly higher than that of calcium alginate capsules (69.46%) and CAC‐Pro capsules (76.92%). This study provided an effective approach for modifying alginate capsule capsules to reduce the loss of probiotics viability.