A versatile strategy for the fabrication of functional and nanostructured poly(N-alkyl acrylamide)-based amphiphilic polymer conetworks (APCNs) from hydrophobic precursor networks is presented. The active ester monomer pentafluorophenyl acrylate (PFPA) acts as a general hydrophobic masking group for N-alkyl acrylamides, by providing both miscibility with hydrophobic macromonomer crosslinkers and activating the acrylate for amidation reactions. Thereby, hydrophobic precursor networks can be transformed into a multitude of different poly(N-alkyl acrylamide)-l-PDMS APCNs. The resulting optically transparent APCNs possess nanophase-separated morphologies with domains sizes in the nanometer range. Variation of the amide type results in different types of APCNs, despite them being derived from the same precursor network and having identical network structures. Accordingly, the properties of these APCNs can be tailored according to the desired application by simple variation of the amide functionality. Furthermore, the combination of PFPA with another hydrophobically masked monomer allows for the fabrication of APCNs with small yet precisely defined amounts of functional amide units in the hydrophilic phase. A controlled functionalization of APCNs with pendant groups such as pH-responsive imidazole, fluorescent dyes, and biotin for specific protein binding is achieved, greatly expanding the functionality of the APCNs. Such functionalized APCNs could find application as stimuli-responsive drug delivery membranes, smart hydrogels, biosensors, or as matrices for biocatalysis.