The consequences of the earth’s daily rotation have led to 24-hour biological rhythms in most organisms. Parasites have daily rhythms, which, when in synchrony with host rhythms, optimize their fitness. Using round-the-clock transcriptomics of male and female Schistosoma mansoni blood flukes we have discovered the first 24-hour molecular oscillations in a metazoan parasite, and gained insight into its daily rhythms. We show that expression of ∼2% of its genes followed diel cycles. Rhythmic processes, in synchrony in both sexes, included a night-time stress response and a day-time metabolic ‘rush hour’. These 24hr rhythms may be driven by host rhythms and/or generated by an intrinsic circadian clock. However, canonical core clock genes are lacking, suggesting an unusual oscillatory mechanism or loss of a functional clock. The daily rhythms in biology identified here, may promote within-host survival and between-host transmission, and are important for the development and delivery of therapeutics against schistosomiasis.