Positron lifetime τ measurements are performed to study defect annealing and decomposition in Al–(0.003 to 0.36 at%) Sc alloys during isochronal and isothermal heat treatment of water‐quenched samples. A two‐stage behaviour of the positron lifetime observed below 200°C is explained as migration and clustering of quenched‐in vacancy‐Sc atom complexes followed by the annealing of vacancy clusters. In alloys containing 0.18 and 0.36 at% Sc an extra peak appears in the average positron lifetime around 300°C which is attributed to the precipitation of coherent Al3Sc particles. Although the volume fraction of Al3Sc is very small, f ≈ 0.5%, the precipitates are detected by positrons due to their fine‐disperse distribution (diameter ≈ 10 nm). A vacancy‐type lifetime component which appears simultaneously with the precipitate formation is attributed to structural vacancies of the Al3Sc phase or to vacancies associated with the Al3Sc particle‐matrix interface.