The genetic relatedness of the Bacillus anthracis typing phages Gamma and Cherry was determined by nucleotide sequencing and comparative analysis. The genomes of these two phages were identical except at three variable loci, which showed heterogeneity within individual lysates and among Cherry, W, Fah, and four Gamma bacteriophage sequences.Bacteriophages are useful tools for bacterial species and strain differentiation (7,20 anthracis phage called Cherry phage has also been used for typing, albeit less frequently (13); however, its relationship to Gamma phage was not known. Gamma and Cherry phages appear identical under the electron microscope, and both belong to the Siphoviridae morphotype (13, 36).We completed and analyzed the nucleotide sequences of the Gamma and Cherry phages to determine their genetic relatedness. During the course of sequencing, it was determined through restriction enzyme mapping and PCR experiments that the stock phage preparations were heterogeneous, which led to the acquisition and sequencing of a second Gamma phage preparation from USAMRIID. Comparison of the complete genome sequences has revealed the location of three distinct variable genetic loci. These variable loci were also compared with the sequences of W, W␥ d , W␥ P , and Fah (Table 1). Overall, this work provides a striking example of how diagnostic bacteriophages can evolve over several years in different laboratories.Bacterial strains and phage DNA isolation. Gamma-LSU phage (W␥ L ) and Cherry phage (W␥ C ) DNA were provided by Pamala R. Coker while at Louisiana State University. The phages were propagated on B. anthracis strain Vollum by plating on Trypticase soy agar with 5% sheep blood (Remel, Kansas) followed by amplification in nutrient broth. Bacterial cells were removed from the lysate by filtration through a 0.22-m syringe filter prior to isolation of bacteriophage genomic DNA. A stock Gamma-USAMRIID phage (W␥ U ) lysate was obtained from John Ezzell, USAMRIID, Fort Detrick, MD, and propagated on B. cereus ATCC 4342. A single isolated plaque was picked after overnight growth from a lawn of B. cereus ATCC 4342 using the agar layer method (2). Bacteriophages from this plaque were propagated on B. cereus ATCC 4342 on agar plates (2). The resulting cell lysate was passed over DE52 cellulose resin to remove unpackaged, contaminating nucleic acids in the lysate (18). The flowthrough was then filtered through a 0.22-m syringe filter to remove bacterial cells. W␥ L and W␥ C genomic DNA was purified using a QIAGEN Lambda DNA extraction kit (QIAGEN, Germany). The DNA extraction procedure was modified from the QIAGEN Lambda DNA extraction kit (QIAGEN, Germany) by resuspending the polyethylene glycol phage pellet in 215 l of buffer L4 and 4.3