The mitochondrial genome of the smaller tea tortrix Adoxophyes honmai (Lepidoptera: Tortricidae)

Lee, Eun-Seung; Shin, Kwang Sik; Kim, Moo‐Sang; Park, Hyung-Jin; Cho, Soowon; Kim, Chang-Bae

doi:10.1016/j.gene.2006.01.003

Cited by 131 publications

(72 citation statements)

References 26 publications

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“…Except for COI with CGA start codon, respectively, the remaining PCGs initiated with the three orthodox start codons (ATN). The abnormal start codon in the COI gene was found presently in all mitochondrial genomes of Lepidoptera (Lee et al 2006). Three PCGs (COI, COII and ND4) used incomplete stop codon T, which was commonly reported in other invertebrates (Masta & Boore 2004).…”

Section: Article Historymentioning

confidence: 88%

The complete mitochondrial genome of Euthrix laeta (Lepidoptera: Lasiocampidae)

Xiao

et al. 2016

Mitochondrial DNA Part B

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The complete mitochondrial genome of Euthrix laeta (GenBank accession number KU870700) was sequenced by traditional PCR amplification and primer walking methods. The total length was 15,368 bp, including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and a A + T-rich region. The base composition of the genome was A (40.85%), T (39.34%), C (12.01%) and G (7.8%), respectively. The arrangement of all genes was identical to other lepidopteran insects. The phylogenetic relationships were established based on the nucleotide sequences of 13 protein-coding genes of mitochondrial genomes by the neighbor-joining method. The molecular-based phylogeny supported the traditional morphological classification on relationships within Lepidoptera species.

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Section: Article Historymentioning

confidence: 88%

The complete mitochondrial genome of Euthrix laeta (Lepidoptera: Lasiocampidae)

Xiao

et al. 2016

Mitochondrial DNA Part B

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“…Atp8 and atp6 PCGs had a seven-nucleotide overlap (Table 1). This feature is common to all lepidopteran mitogenomes known (Brower, 1994;Yukuhiro et al, 2002;Coates et al, 2005;Kim et al, 2006;Lee et al, 2006;Cameron Hong et al, 2008) and is found in many animal mitogenomes (Boore, 1999). The A+T content of the PCGs was 79.4%, which is lower than the A+T content of the mitogenome as a whole (80.7%).…”

Section: Protein Coding Genesmentioning

confidence: 90%

“…The 13 PCGs spanned 11,369 bp and accounted for 73.90% of the entire sequence. The M. vitrata (New World) mitogenome had the typical Ditrysian gene order trnM-trnI-trnQ-nad2 (Yukuhiro et al, 2002;Coates et al, 2005;Kim et al, 2006;Lee et al, 2006;Cameron and Whiting, 2008;Hong et al, 2008), which differed from the ancestral gene order trnItrnE-trnM-nad2 found in other insects (Cameron, 2014). This was first reported by Taylor et al (1993) in lycaenids and noctuids, but has now been found in five lepidopteran superfamilies (Papilionoidea, Noctuoidea, Pyraloidea, Tortricoidea, and Bombycoidea) and a synapomorphy of Ditrysia (Salvato et al, 2008).…”

Section: Mitogenome Assembly and Annotationmentioning

confidence: 99%

“…Also, consistent with some other insect mitogenomes, cox1 and cox2 both had incomplete (T-) stop codon (Coates et al, 2005;Salvato et al, 2008) (Table 1). The presence of incomplete stop codons is a molecular feature shared with all lepidopteran mitogenomes sequenced to date (Brower, 1994;Yukuhiro et al, 2002;Coates et al, 2005;Kim et al, 2006;Lee et al, 2006;Cameron and Whiting, 2008;Hong et al, 2008) and with many arthropod mitogenomes (Boore, 1999). The motif TTAG has been observed immediately upstream of the putative cox1 CGA start codon in some lepidopteran mitogenomes and has been proposed to serve in non-standard initiation (Yukuhiro et al, 2002).…”

Section: Protein Coding Genesmentioning

confidence: 99%

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Comparison of the mitochondrial genomes of the Old and New World strains of the legume pod borer, Maruca vitrata (Lepidoptera: Crambidae)

Agunbiade

Coates

Sun

et al. 2017

Int. J. Trop. Insect Sci.

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Abstract. Maruca vitrata (Fabricius, 1787) is a cryptic pantropical species of Lepidoptera that are comprised of two unique strains that inhabit the American continents (New World strain) and regions spanning from Africa through to Southeast Asia and Northern Australia (Old World strain). In this study, we de novo assembled the complete mitochondrial genome sequence of the New World legume pod borer, M. vitrata, from shotgun sequence data generated on an Illumina HiSeq 2000. Phylogenomic comparisons were made with other previously published mitochondrial genome sequences from crambid moths, including the Old World strain of M. vitrata. The 15,385 bp M. vitrata (New World) sequence has an 80.7% A+T content and encodes the 13 protein-coding, 2 ribosomal RNA and 22 transfer RNA genes in the typical orientation and arrangement of lepidopteran mitochondrial DNAs. Mitochondrial genome-wide comparison between the New and Old World strains of M. vitrata detected 476 polymorphic sites (4.23% nucleotide divergence) with an excess of synonymous substitution as a result of purifying selection. Furthermore, this level of sequence variation suggests that these strains diverged from ∼1.83 to 2.12 million years ago, assuming a linear rate of short-term substitution. The de novo assemblies of mitochondrial genomes from next-generation sequencing (NGS) reads provide readily available data for similar comparative studies.

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“…and Nepticuloidea (Stigmella roborella) were included as outgroups. GenBank accession numbers are as follows: Urodus decens, KJ508062 (Timmermans et al 2014); Adoxophyes honmai, DQ073916 (Lee et al 2006); Ethmia eupostica, KJ508047 (Timmermans et al 2014); Perimede sp., KJ508041 (Timmermans et al 2014); Endrosis sarcitrella, KJ508037 (Timmermans et al 2014); Promalactis suzukiella, KM875542 (Park et al 2014); Oegoconia novimundi, KJ508036 (Timmermans et al 2014); Atrijuglans hetaohei, KT581634 (Unpublished); Pectinophora gossypiella, KM225795 (Zhao et al 2016); Tineola bisselliella, KJ508045 (Timmermans et al 2014); Phyllonorycter froelichiella, KJ508048 (Timmermans et al 2014); Astrotischeria sp., KJ508056 (Timmermans et al 2014); and Stigmella roborella, KJ508054 (Timmermans et al 2014). …”

Section: Disclosure Statementmentioning

confidence: 99%