“…After the complete sequence of the TYLCV-Th genome had been derived, further analysis was carried out using sequence analysis software from DNASTAR Inc. Optimal alignments (pairwise and multiple) and estimating degrees of sequence identity between analogous DNA and predicted protein sequences of specific geminiviruses were made using the Megalign program. Geminiviruses used for the comparative analyses included: TYLCV-Th, TYLCV-I (Navot et al, 1991), TYLCV-S (Kheyr-Pour et al, 1991), TLCV , ACMV (Stanley & Gay, 1983), TGMV (Hamilton et al, 1984), BGMV (Howarth et al, 1985), squash leaf curl virus (SqLCV) (Lazarowitz & Lazdins, 1991), Chloris striate mosaic virus (CSMV; Andersen et al, 1988), MSV (Mullineaux et al, 1984), wheat dwarf virus (WDV) (MacDowell et al, 1985), Digitaria streak virus (DSV) (Donson et al, 1987), abutilon mosaic virus (AbMV) (Frischmuth et al, 1990) and BCTV (Stanley et al, 1986). The sequences of the intergenic regions of bean dwarf mosaic virus (BDMV; Gilbertson et al, 1991a) and tomato mottle virus (TMoV; Gilbertson et al, 1991b) were retrieved from the GenBank Sequence Database (accession numbers M88179 and M90494, respectively).…”