In a stationary case and for any potential, we solve the three-dimensional quantum Hamilton-Jacobi equation in terms of the solutions of the corresponding Schrödinger equation. Then, in the case of separated variables, by requiring that the conjugate momentum be invariant under any linear transformation of the solutions of the Schrödinger equation used in the reduced action, we clearly identify the integration constants successively in one, two and three dimensions. In each of these cases, we analytically establish that the quantum Hamilton-Jacobi equation describes microstates not detected by the Schrödinger equation in the real wave function case.