Transferability of Barley Retrotransposons (Sukkula and Nikita) to Investigate Genetic Structure of Pimpinella anisum L.

Marakli, Sevgi

doi:10.7240/marufbd.395068

Cited by 6 publications

(3 citation statements)

References 35 publications

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“…Marakli [66]. Interestingly, polymorphism rate of Nikita in this study was calculated as 0-60%, suggesting that Nikita IRAP primer may also be used in further characterization and diversity studies.…”

Section: Discussionmentioning

confidence: 58%

“…In our study, we observed 0-100% polymorphism rate, suggesting that Sukkula retrotransposon is favourable to perform Colchicum characterization and diversity studies. Marakli [66]. Interestingly, polymorphism rate of Nikita in this study was calculated as 0-60%, suggesting that Nikita IRAP primer may also be used in further characterization and diversity studies.…”

Section: Several Studies Have Been Performed For Genetic Characterizamentioning

confidence: 58%

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Transposon studies on Colchium chalcedonicum

Karlık

Albayrak

Üzen

et al. 2019

International Journal of Life Sciences and Biotechnology

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Colchicum chalcedonicum is one of the endemic plants in Turkey. The aim of this study was the investigation of the retrotransposon SIRE1, Sukkula and Nikita presence and insertion patterns in C. chalcedonicum. The plant samples were collected from the botanic garden of the Istanbul University. DNA isolation was performed from leaves by using modified CTAB/SEVAG protocol. Retrotransposon movements were investigated using SIRE1, Sukkula and Nikita primers by Inter Retrotranposon Amplified Polymorphism PCR technique (IRAP-PCR). Polymorphism percentages (%) were calculated based on Jaccard Similarity Index. We observed that polymorphism ratios of SIRE1, Sukkula and Nikita retrotransposons among all samples were 0-40%, 0-100% and 0-60%, respectively. This is the first report to demonstrate three barley ─ SIRE1, Sukkula and Nikita─ retrotransposons presence and movements in C. chalcedonicum which is belonged to Colchium family, thus these IRAP primers may be used in further characterization and diversity studies of Colchicum family.

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Section: Discussionmentioning

confidence: 58%

Section: Several Studies Have Been Performed For Genetic Characterizamentioning

confidence: 58%

Transposon studies on Colchium chalcedonicum

Karlık

Albayrak

Üzen

et al. 2019

International Journal of Life Sciences and Biotechnology

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“…In one of these studies, Nikita and Sukkula retrotransposons were studied in the aniseed. Polymorphism was not found in both retrotransposons but their presence in the aniseed genome was determined (Marakli 2018). In another study, these two retrotransposons were identi ed in two varieties of black pine (Pinus nigra var.…”

Section: Discussionmentioning

confidence: 99%

Genetic diversity among queen bee, worker bees and larvae in terms of retrotransposon movements

Mercan

Bulbul

Marakli

2022

Genet Resour Crop Evol

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Honeybee (Apis mellifera L.) is a model organism, contributing signi cant effect on global ecology by pollination and examining due to its social behaviour. MethodsIn this study, barley-speci c Sukkula and Nikita retrotransposons were analysed using IRAP (Inter-Retrotransposon Ampli cation Polymorphism) marker technique, and the relationships between retrotransposon movements and development were also investigated in three different colonies of the Caucasian bee (Apis mellifera caucasica). Furthermore, transposon sequences belonging to Apis mellifera, Bombus terrestris, Triticum turgidum and Hordeum vulgare were also examined to gure out evolutionary relationships. ResultsFor this purpose, a queen bee, ve worker bees, and ve larvae from each colony were studied. Both retrotransposons were found in all samples in three colonies with different polymorphism ratios (0-100% for Nikita and 0-67% for Sukkula). We also determined polymorphisms in queen-worker (0-83% for Nikita, 0-63% for Sukkula), queen-larvae (0-83% for Nikita, 0-43% for Sukkula) and worker-larvae comparisons (0-100% for Nikita, 0-63% for Sukkula) in colonies. Moreover, close relationships among transposons found in plant and insect genomes as a result of in silico evaluations to verify experimental results. ConclusionThis work could be one of the rst studies to analyse plant-speci c retrotransposons' movements in honeybee genome. Results are expected to understand evolutionary relationships in terms of horizontal transfer of transposons among kingdoms.

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Investigation of the genetic variation of anise (Pimpinella anisum L.) using RAPD and ISSR markers

Giachino

2019

Genet Resour Crop Evol

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Transferability of Barley Retrotransposons (Sukkula and Nikita) to Investigate Genetic Structure of Pimpinella anisum L.

Cited by 6 publications

References 35 publications

Transposon studies on Colchium chalcedonicum

Transposon studies on Colchium chalcedonicum

Genetic diversity among queen bee, worker bees and larvae in terms of retrotransposon movements

Investigation of the genetic variation of anise (Pimpinella anisum L.) using RAPD and ISSR markers

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