Transition States for Psychrophilic and Mesophilic (R)-3-Hydroxybutyrate Dehydrogenase-Catalyzed Hydride Transfer at Sub-zero Temperatures

Abstract

Hydroxybutyrate dehydrogenase (HBDH) catalyzes the NADH-dependent reduction of 3-oxocarboxylates to (R)-3-hydroxycarboxylates. The active sites of a pair of cold-and warm-adapted HBDHs are identical except for a single residue, yet kinetics evaluated at −5, 0, and 5 °C show a much higher steadystate rate constant (k cat ) for the cold-adapted than for the warmadapted HBDH. Intriguingly, single-turnover rate constants (k STO ) are strikingly similar between the two orthologues. Psychrophilic HBDH primary deuterium kinetic isotope effects on k cat ( D k cat ) and k STO ( D k STO ) decrease at lower temperatures, suggesting more efficient hydride transfer relative to other steps as the temperature decreases. However, mesophilic HBDH D k cat and D k STO are generally temperature-independent. The D k STO data allowed calculation of intrinsic primary deuterium kinetic isotope effects. Intrinsic isotope effects of 4.2 and 3.9 for cold-and warm-adapted HBDH, respectively, at 5 °C, supported by quantum mechanics/ molecular mechanics calculations, point to a late transition state for both orthologues. Conversely, intrinsic isotope effects of 5.7 and 3.1 for cold-and warm-adapted HBDH, respectively, at −5 °C indicate the transition state becomes nearly symmetric for the psychrophilic enzyme, but more asymmetric for the mesophilic enzyme. His-to-Asn and Asn-to-His mutations in the psychrophilic and mesophilic HBDH active sites, respectively, swap the single active-site position where these orthologues diverge. At 5 °C, the His-to-Asn mutation in psychrophilic HBDH decreases D k cat to 3.1, suggesting a decrease in transition-state symmetry, while the Histo-Asn mutation in mesophilic HBDH increases D k cat to 4.4, indicating an increase in transition-state symmetry. Hence, temperature adaptation and a single divergent active-site residue may influence transition-state geometry in HBDHs.