Demands for tomato local varieties are increasing worldwide, especially in organic farming mainly for their high sensory value and attractive appearance. This is the case of the “Moruno” tomato type, widely grown in the Mediterranean countries and greatly due to its highly appreciated organoleptic attributes but low yield or a short postharvest period. For this reason, the study aimed to assess if grafting of local “Moruno” populations (Mor-62, Mor-204) using commercial rootstocks (King-Kong F1, K; Multifort F1, M; Spirit F1, S) affects yield, fruit nutritional and functional composition, postharvest storage and consumer acceptance. Results showed differences between both populations, while rootstocks were only different for the glucose content and the flavour quality. Grafting improved the marketable yield (~43%), fruit number (~22%) and mean fruit weight (~12%), but had no incidence on the blossom-end rot disorder. This technique increased the carotenoid (lycopene, β-carotene and total carotene) content but decreased the organic acids (malic and citric) and sugar (fructose and glucose) rates, while ascorbic acid was not affected. The fruit postharvest storage was not practically modified. However, the overall flavour preference and visual appearance varied depending on the scion.