Microalgae often stand out for their high biodiversity as well as their associated large number of potent bioactives. Therefore, they are interesting candidates as possible sources of antiviral substances, e.g. against cyprinid herpesvirus 3 (CyHV-3). Although this virus leads to high mortalities in aquacultures, there is no treatment available yet. Hence, ethanolic extracts produced with accelerated solvent extraction from six microalgal species (Arthrospira platensis, Chlamydomonas reinhardtii, Chlorella kessleri, Haematococcus pluvialis, Nostoc punctiforme and Scenedesmus obliquus) were examined in this study for inhibitory effects on viral replication. An inhibition of the in vitro replication of CyHV 3 in common carp brain cells could be confirmed for all six species, with the greatest effect for the C. reinhardtii and H. pluvialis extracts. At still non-cytotoxic concentrations viral DNA replication was reduced by over 3 orders of magnitude (> 99.9 %) each compared to the untreated replication controls, while the virus titers were at or even below the limit of detection. When pre-incubating cells and virus with C. reinhardtii and especially H. pluvialis extracts before inoculation, the reduction of viral DNA and virus titer was even stronger. Based on these results, an intervention in the initial replication steps like viral adsorption or membrane fusion is assumed. Moreover, a protection mechanism preventing the production of viral proteins and the assembly of mature virions is also possible. All in all, the results show that microalgae are a very promising source of natural antiviral substances against CyHV-3.