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Abstract. Despite growing evidence that methane (CH4) formation could also occur in well-oxygenated surface fresh waters, its significance at the ecosystem scale is uncertain. Empirical models based on data gathered at high latitude predict that the contribution of oxic CH4 increases with lake size and should represent the majority of CH4 emissions in large lakes. However, such predictive models could not directly apply to tropical lakes, which differ from their temperate counterparts in some fundamental characteristics, such as year-round elevated water temperature. We conducted stable-isotope tracer experiments, which revealed that oxic CH4 production is closely related to phytoplankton metabolism and is a common feature in five contrasting African lakes. Nevertheless, methanotrophic activity in surface waters and CH4 emissions to the atmosphere were predominantly fuelled by CH4 generated in sediments and physically transported to the surface. Indeed, CH4 bubble dissolution flux and diffusive benthic CH4 flux were several orders of magnitude higher than CH4 production in surface waters. Microbial CH4 consumption dramatically decreased with increasing sunlight intensity, suggesting that the freshwater “CH4 paradox” might be also partly explained by photo-inhibition of CH4 oxidizers in the illuminated zone. Sunlight appeared as an overlooked but important factor determining the CH4 dynamics in surface waters, directly affecting its production by photoautotrophs and consumption by methanotrophs.

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Lake Edward is one of the African Rift Valley lakes draining into the Nile River basin. We conducted three sampling series in Lake Edward in October-November 2016, March-April 2017 and January 2018, in distinct seasonal conditions and in several sites varying by depth and proximity to river outlets, including the Kazinga Channel, which connects the hypertrophic Lake George to Lake Edward. The phytoplankton was examined using microscopy and marker pigment analysis by high performance liquid chromatography (HPLC) and subsequent CHEMTAX processing for estimating abundance of phytoplankton groups. Chlorophyll a concentration in the pelagic and littoral open lake sites barely exceeded 10 mg L À1 whereas, in contrast, in the semi-enclosed Bay of Katwe influenced by the Kazinga Channel chlorophyll a was up to 100 mg L À1 . Despite substantial seasonal variations of limnological conditions such as photic and mixed layer depths, cyanoprokaryotes/cyanobacteria represented on average 60% of the phytoplankton biomass, followed by diatoms, which contributed~25% of chlorophyll a, and by green algae, chrysophytes and cryptophytes. 248 taxa were identified with clear prevalence of cyanobacteria (104 taxa), from the morphological groups of coccal and filamentous species (non-heterocytous and heterocytous). The high proportion of heterocytous cyanobacteria, along with a relatively high particulate organic carbon to nitrogen (C:N) ratio, suggest N limitation as well as light limitation, most pronounced in the pelagic sites. During the rainy season, the most abundant diatoms in the plankton were needle-like Nitzschia. Comparison with previous studies found differences in water transparency, total phosphorus, and phytoplankton composition.

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