A bacterial strain capable of growing on propachlor (2-chloro-N-isopropylacetanilide) was isolated from soil by using enrichment and isolation techniques. The strain isolated, designated GCH1, was classified as a member of the genus Pseudomonas. Washed-cell suspensions of strain GCH1 accumulated N-isopropylacetanilide, acetanilide, acetamide, and catechol. Pseudomonas strain GCH1 grew on propachlor with a generation time of 4.2 h and a rate of substrate utilization of 1.75 ؎ 0.15 mol h ؊1 . Gene expression did not require induction but was subject to catabolite expression. Acetanilide was a growth substrate with a yield of 0.56 ؎ 0.02 mg of protein mol ؊1 . GCH1 strain cells were immobilized by adsorption onto a ceramic support and were used as biocatalysts in an immobilized cell system. Propachlor elimination reached 98%, with a retention time of 3 h and an initial organic load of 0.5 mM propachlor. The viability of immobilized cells increased 34-fold after 120 days of bioreactor operation.Propachlor (2-chloro-N-isopropylacetanilide) is an acylanilide herbicide widely used with corn, onion, cabbage, rose bushes, and ornamental plants. Microbial degradation (11,15,16,19) is the primary mechanism of acylanilide dissipation from soil. We previously reported the isolation of Pseudomonas strain PEM1 (3, 10, 11), which metabolizes the herbicide propachlor, yielding N-isopropylacetanilide, acetanilide, and acetamide as intermediates, and the isolation of Acinetobacter strain BEM2, which follows a different pathway and yields N-isopropylaniline and isopropylamine as intermediates. Lee et al. (9) reported that N-isopropylaniline, N-isopropylacetanilide, N-(1-hydroxyisopropyl)acetanilide, and N-isopropyl-2-acetoxyacetanilide were formed in soil treated with propachlor. Villareal et al. (18) proposed a propachlor degradative pathway yielding 2-chloro-N-isopropylacetamide and catechol as intermediates.Groundwater and soil contamination by herbicides has recently become of increasing concern (6,7,20). The relatively new concept of bioremediation provides a potentially cheap alternative to traditional disposal techniques, in addition to representing a genuine removal of contaminants by microbial degradation rather than the relocation of contaminants in such processes as landfilling. The problems presented by continuous fermentation processes could be resolved by the use of immobilized cells as biocatalysts (5,7,12,21).The aim of this study was to characterize the propachlor metabolism of a strain (GCH1) isolated from soil and to test a bioremediation system using immobilized cells in a reactor operating over a period of 150 days. The kinetics of the degradation and the viability of the immobilized cells are reported. MATERIALS AND METHODSIsolation of bacteria. Ten soil samples (10) were collected from agricultural fields in Madrid, Spain, with a history of propachlor contamination. Minimal medium (MB) (4) supplemented with 45 mg of propachlor liter Ϫ1 was inoculated with 20 g of soil sample and incubated at 28°C without sh...

Current knowledge about aquatic pathogens are scarce because bacteria, protozoans, algae and their toxins occur at low concentrations, making them difficult to measure directly or to filter sufficient volumes to facilitate detection. We developed and validated tools to detect pathogens in freshwater systems. To evaluate impacts on water quality, a phylogenetic microarray was developed in the EU project μAQUA to detect simultaneously numerous pathogens and was applied in MicroCoKit, to samples taken from four locations from two seasons for two years along the length of the Tiber River, Italy. The sites ranged from a pristine site near its source to ones contaminated by agricultural, industrial and anthropogenic waste moving downstream to near its mouth. Fifty litres were collected and concentrated using a hollow-fibre ultrafiltration, a rapid method with minimal cell loss to provide a concentrate for downstream analysis. The 60 Da cut-off ensures many organics, such as toxins, will be concentrated for analysis. Aliquots from the concentrate were preserved in TRI-Reagent and total RNA extracted, labelled and hybridised to the phylochip to detect pathogenic bacteria, protozoa and toxic cyanobacteria. The microarray results gave positive signals for all pathogens. Calibration curves enabled us to infer cell concentrations. Cross validation was performed using FISH probes for selected toxic cyanobacteria and hybridised to aliquots taken from the raw water prior to concentration by the hollow fibre filters.

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We examined the ability of a soil bacterium, Klebsiella planticola strain DSZ, to degrade the herbicide simazine (SZ). Strain DSZ is metabolically diverse and grows on a wide range of s-triazine and aromatic compounds. DSZ cells grown in liquid medium with SZ (in 10 mM ethanol) as carbon source mineralized 71.6+/-1.3% of 0.025 mM SZ with a yield of 4.6+/-0.3 microg cell dry weight mmol(-1) carbon. The metabolites produced by DSZ during SZ degradation included ammeline, cyanuric acid, N-formylurea and urea. We studied the physiological adaptations which allow strain DSZ to metabolize SZ. Using scanning electron microscopy, we detected DSZ cells covering the surfaces of SZ crystals when the herbicide was used at high concentrations (0.1 mM). The membrane order observed by FTIR spectroscopy showed membrane activity at low temperature (4 degrees C) to assimilate the herbicide. Membrane fatty acid analysis demonstrated that strain DSZ adapted to grow on SZ by increasing the degree of saturation of membrane lipid fatty acid; and the opposite effect was detected when both SZ and ethanol were used as carbon sources. This confirms the modulator effect of ethanol on membrane fluidity.

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