Abstract. Great Salt Lake (Utah, USA) is one of the world's largest hypersaline lakes, supporting many of the western U.S.'s migratory waterbirds. This unique ecosystem is threatened, but it and other large hypersaline lakes are not well understood. The ecosystem consists of two weakly linked food webs: one phytoplankton-based, the other organic particle/benthic algae-based.Seventeen years of data on the phytoplankton-based food web are presented: abundances of nutrients (N and P), phytoplankton (Chlorophyta, Bacillariophyta, Cyanophyta), brine shrimp (Artemia franciscana), corixids (Trichocorixa verticalis), and Eared Grebes (Podiceps nigricollis). Abundances of less common species, as well as brine fly larvae (Ephydra cinerea and hians) from the organic particle/benthic algae-based food web are also presented. Abiotic parameters were monitored: lake elevation, temperature, salinity, PAR, light penetration, and DO. We use these data to test hypotheses about the phytoplankton-based food web and its weak linkage with the organic particle/benthic algae-based food web via structural equation modeling.Counter to common perceptions, the phytoplankton-based food web is not limited by high salinity, but principally through phytoplankton production, which is limited by N and grazing by brine shrimp. Annual N abundance is highly variable and depends on lake volume, complex mixing given thermo-and chemo-clines, and recycling by brine shrimp. Brine shrimp are food-limited, and predation by corixids and Eared Grebes does not depress their numbers. Eared Grebe numbers appear to be limited by brine shrimp abundance. Finally, there is little interaction of brine fly larvae with brine shrimp through competition, or with corixids or grebes through predation, indicating that the lake's two food webs are weakly connected.Results are used to examine some general concepts regarding food web structure and dynamics, as well as the lake's future given expected anthropogenic impacts.

Extinction of populations occurs naturally, but global extinction rates are accelerating, making understanding extinction a high priority for conservation. Extinction in experimental populations of brine shrimp (Artemia franciscana) was measured to assess hypothesized extinction processes. Greater initial population size, greater maximum population size supported by the environment, and lower variation in environmental conditions reduced the likelihood of extinction, as hypothesized. However, initial population size was less important, and maximum population size and environmental variation were more important than often hypothesized. Unexpectedly, deterministic oscillations in population size due to inherent nonlinear dynamics and overcrowding were as important or more important than hypothesized processes.

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Delineating conservation units (CUs, e.g., evolutionarily significant units, ESUs, and management units, MUs) is critical to the recovery of declining species because CUs inform both listing status and management actions. Genomic data have strengths and limitations in informing CU delineation and related management questions in natural systems. We illustrate the value of using genomic data in combination with landscape, dispersal and occupancy data to inform CU delineation in Nevada populations of the Great Basin Distinct Population Segment of the Columbia spotted frog (Rana luteiventris). R. luteiventris occupies naturally fragmented aquatic habitats in this xeric region, but beaver removal, climate change and other factors have put many of these populations at high risk of extirpation without management intervention. We addressed three objectives: (i) assessing support for ESUs within Nevada; (ii) evaluating and revising, if warranted, the current delineation of MUs; and (iii) evaluating genetic diversity, effective population size, adaptive differentiation and functional connectivity to inform ongoing management actions. We found little support for ESUs within Nevada but did identify potential revisions to MUs based on unique landscape drivers of connectivity that distinguish these desert populations from those in the northern portion of the species range. Effective sizes were uniformly small, with low genetic diversity and weak signatures of adaptive differentiation. Our findings suggest that management actions, including translocations and genetic rescue, might be warranted. Our study illustrates how a carefully planned genetic study, designed to address priority management goals that include CU delineation, can provide multiple insights to inform conservation action.

The Paiute Cutthroat Trout (PCT) Oncorhynchus clarkii seleniris is classified as a subspecies within the greater Cutthroat Trout O. clarkii ssp. complex and is federally listed as threatened under the Endangered Species Act. However, genetic studies to date have revealed very little genetic differentiation between the PCT and its closest relative, the Lahontan Cutthroat Trout (LCT) O. clarkii henshawi. These results casted doubt on whether the PCT is a genetically distinct subspecies or merely a phenotypic variant of the LCT. Here, we present a genomic analysis of Cutthroat Trout subspecies and populations to resolve the genetic and phylogenetic relationship between PCT and LCT. Our results demonstrate substantial genetic structure and differentiation between PCT and LCT populations. In contrast to current thinking, our phylogenetic reconstructions show the PCT to be a distinct evolutionary lineage that diverged from LCT before the LCT differentiated into its current populations (i.e., rather than PCT divergence due to geographic isolation from an LCT population in the Carson River). We conclude that the PCT is genetically distinct from the LCT.