Ontogenetic niche shifts are taxonomically and ecologically widespread across the globe. Consequently, identifying the ecological mechanics that promote these shifts at diverse scales is central to an improved understanding of ecosystems generally. We evaluated multiple potential drivers of ontogenetic niche shifts (predation, growth, maturation, diet shifts, and food availability) for three fish species between connected coral reef and nearshore habitats. In all cases, neither diet compositional change nor sexual maturity functioned as apparent triggers for emigration from juvenile to adult habitats. Rather, the fitness advantages conferred on reef inhabitants (that is, enhanced growth rates) were primarily related to high prey availability on reefs. However, there exists a clear trade-off to this benefit as survival rates for small fishes were significantly reduced on reefs, thereby revealing the potential value of (and rationale behind high juvenile abundances in) nearshore habitat as predation refugia. We ultimately conclude that predation risk functions as the primary early life stage inhibitor of ontogenetic niche shifts towards more profitable adult habitats in these systems. Furthermore, this study provides a case study for how complex, meta-dynamic populations and ecosystems might be better understood through the elucidation of simple ecological trade-offs.

Coral reefs are experiencing increasing anthropogenic impacts that result in substantial declines of reef-building corals and a change of community structure towards other benthic invertebrates or macroalgae. Reefs around Zanzibar are exposed to untreated sewage and runoff from the main city Stonetown. At many of these sites, sponge cover has increased over the last years. Sponges are one of the top spatial competitors on reefs worldwide. Their success is, in part, dependent on their strong chemical defenses against predators, microbial attacks and other sessile benthic competitors. This is the first study that investigates the bioactive properties of sponge species in the Western Indian Ocean region. Crude extracts of the ten most dominant sponge species were assessed for their chemical defenses against 35 bacterial strains (nine known as marine pathogens) using disc diffusion assays and general cytotoxic activities were assessed with brine shrimp lethality assays. The three chemically most active sponge species were additionally tested for their allelopathic properties against the scleractinian coral competitor Porites sp.. The antimicrobial assays revealed that all tested sponge extracts had strong antimicrobial properties and that the majority (80%) of the tested sponges were equally defended against pathogenic and environmental bacterial strains. Additionally, seven out of ten sponge species exhibited cytotoxic activities in the brine shrimp assay. Moreover, we could also show that the three most bioactive sponge species were able to decrease the photosynthetic performance of the coral symbionts and thus were likely to impair the coral physiology.

Farming of Eucheuma denticulatum is a major activity in Zanzibar affecting seagrass ecosystems primarily through shading and trampling. The aim of this study was to test the impacts of shading and trampling during seaweed farming on seagrass meadows composed by Halophila stipulacea and Thalassia hemprichii and their associated benthic macroalgae. Areas covered by these species were selected for the building of seaweed farms in three treatments: seaweed farm plots (with shading and trampling effects), trampling plots (with trampling effects only), and control plots (with no shading or trampling effects). Reduction of light within the plots was recorded over 9 weeks. Percentage cover of seagrasses and macroalgae and shoot density of seagrasses were measured over 12 weeks to assess the impact of shading and trampling by seaweed farming activities. Light was significantly reduced in the seaweed farm plots by 75 to 90% by the end of a seaweed growth cycle. H. stipulacea, despite its capacity for rapid growth, was significantly affected by the combination of shading and trampling under the seaweed farm treatment, while the climax seagrass species T. hemprichii was unaffected. Due to the decline in H. stipulacea, benthic macroalgae cover increased in the seaweed farm treatment, suggesting a change in seagrass community dynamics. In contrast, trampling had a negative effect on the benthic macroalgae as an isolated disturbance, which suggests that seagrasses are more resistant to trampling than macroalgae and would likely dominate the benthic macrophyte community under these conditions.

Abstract. The aim of this work was to explore the feasibility of using plant functional traits to identify differences in sediment organic carbon (OC) storage within seagrass meadows. At 19 sites within three seagrass meadows in the coastal waters of Zanzibar, Tanzania, species cover was estimated along with three community traits hypothesized to influence sediment OC storage (above and belowground biomass, seagrass tissue nitrogen content, and shoot density). Sediments within four biogeographic zones (fore reef, reef flat, tidal channel, and seagrass meadow) of the landscape were characterized, and sediment cores were collected within seagrass meadows to quantify OC storage in the top 25 cm and top meter of the sediment. We identified five distinct seagrass communities that had notable differences in the plant traits, which were all residing within a thin veneer (ranging from 19 to 78 cm thick) of poorly sorted, medium to coarsely grained carbonate sands on top of carbonate rock. One community (B), dominated by Thalassodendron ciliatum, contained high amounts of above (972±74 g DW m−2) and belowground (682±392 g DW m−2) biomass composed of low-elemental-quality tissues (leaf C : N = 24.5; rhizome C : N = 97). While another community (C), dominated by small-bodied ephemeral seagrass species, had significantly higher shoot density (4178 shoots m−2). However, these traits did not translate into differences in sediment OC storage and across all communities the percentage of OC within sediments was similar and low (ranging from 0.15 % to 0.75 %), as was the estimated OC storage in the top 25 cm (14.1±2.2 Mg C ha−1) and top meter (33.9±7.7 Mg C ha−1) of sediment. These stock estimates are considerably lower than the global average (194.2±20.2 Mg C ha−1) reported for other seagrass ecosystems and are on the lower end of the range of estimates reported for the tropical Indo-Pacific bioregion (1.9 to 293 Mg C ha−1). The uniformly low OC storage across communities, despite large inputs of low-quality belowground tissues in community B, indicates that the geophysical conditions of the coarse, shallow sediments at our sites were not conducive to OC stabilization and outweighed any variation in the quantity or quality of seagrass litter inputs. These results add to a growing body of evidence showing that geophysical conditions of the sediment modulate the importance of plant traits in regards to retention of OC within blue carbon ecosystems and cautions against the use of plant traits as a proxy for sediment OC storage across all seagrass ecosystems.