Wall et al., (2018) The effects of environmental history and thermal stress on coral physiology and immunity. Marine Biology (in press) Files These include files for making maps, and plotting the environmental and biological data. All code to generate figures and perform analyses are found in the R-markdown file (.Rmd) R markdown Mydlarz-Gates_Lab_exp_2014.Rmd This is the R.markdown file containing script for data analysis and figure generation All files in repository are used in this annotated markdown file; open in R Studio. Mydlarz-Gates_Lab_exp_2014.html This is the .html output for the R.markdown file. Environmental In situ data coast_n83_shp.zip This zip file contains 6 files. These shape files are used to generate the map of Kāne'ohe Bay. To use these files, see R markdown file; place these files in a folder names 'coast_n83.shp' in directory. KBaymapdata.csv This is a file with buoys, reef names, and their respective lat/long (°) Columns: Origin is the buoy/reef name, lat is latitude, and long is longitude CRIMP1_pCO2.csv This is the pCO 2 data from CRIMP1 buoy, downloaded from NOAA PMEL Columns: Site (CRIMP.1), Time of data collection in mm/dd/yy hh:mm, pCO2.water (µatm) is partial pressure of CO 2 (carbon dioxide) in seawater, Temperature (°C), and pCO2.air (µatm) is partial pressure of CO 2 in air.