The study of the normal function and pathology of the inner ear has unique difficulties as it is inaccessible during life and, so, conventional techniques of pathologic studies such as biopsy and surgical excision are not feasible, without further impairing function. Mathematical modelling is therefore particularly attractive as a tool in researching the cochlea and its pathology. The first step towards efficient mathematical modelling is the reconstruction of an accurate three dimensional (3D) model of the cochlea that will be presented in this paper. The high quality of the histological images is being exploited in order to extract several sections of the cochlea that are not visible on the micro-CT (mCT) images (i.e., scala media, spiral ligament, and organ of Corti) as well as other important sections (i.e., basilar membrane, Reissner membrane, scala vestibule, and scala tympani). The reconstructed model is being projected in the centerline of the coiled cochlea, extracted from mCT images, and represented in the 3D space. The reconstruction activities are part of the SIFEM project, which will result in the delivery of an infrastructure, semantically interlinking various tools and libraries (i.e., segmentation, reconstruction, and visualization tools) with the clinical knowledge, which is represented by existing data, towards the delivery of a robust multiscale model of the inner ear.

In the process of fracture healing, several phases of recovery are observed as the mechanical stability, continuity and normal load carrying capacity are gradually restored. The ultrasonic monitoring and discrimination of different healing stages is a complex process due to the significant microstructure and porous nature of osseous and callus tissues. In this study, we investigate the influence of the callus pores' size and concentration on ultrasound propagation in a long bone at a late healing stage. Different excitation frequencies are applied in the range of 300 kHz-1 MHz. A 2D geometry is developed and axial transmission calculations are performed based on a Finite Element Method. The velocity of the first arriving signal (FAS) and the propagation of guided waves are used as the estimated parameters. It was shown that the FAS velocity can reflect callus porosity changes, while the propagation of guided waves is sensitive to pores' distribution for higher frequencies.

A 3D finite element model of the human middle ear was developed for the investigation of the modeling parameters' effect on the frequency response. In this study, we incorporated realistic reconstructed geometries from microCT imaging data. The geometric representation of the stapedial annular ligament provided additional damping and the Rayleigh parameter β was adjusted to lower values in comparison to previous computational studies. The maximum displacement of the stapes footplate, equal to 0.168 μm, was observed at a frequency of 1050 Hz. The computational results were validated with experimental measurements. Good agreement is observed between our results and the experimental data and other finite element studies.

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