Cancer classification is one major application of microarray data analysis. Due to the ultra high dimensionality nature of microarray data, data dimension reduction has drawn special attention for such type of data analysis. The currently available data dimension reduction methods are either supervised, where data need to be labeled, or computational complex. In this paper, we proposed to use a revised locally linear embedding(LLE) method, which is purely unsupervised and fast as the feature extraction strategy for microarray data analysis. Three public available microarray datasets have been used to test the proposed method. The effectiveness of LLE is evaluated by the classification accuracy of a SVM classifier. Generally, the results are promising.

Grapholita molesta is one of the most destructive fruit pests distributed worldwide. Odorant receptors (ORs) located on the dendritic membrane of chemosensory neurons are deemed to be key molecules for sensing exogenous chemical signals. In this study, GmolOR9, a general OR from G. molesta, was functionally characterized. Quantitative real-time polymerase chain reaction revealed that GmolOR9 was more highly expressed in adults than in other stages, including eggs, larvae, and pupae. GmolOR9 expression was highly significantly more in the antennae of females than in those of males, and the highest level occurred in the antennae of 3-day-old female adults. GmolOR9 was broadly tuned to eight of 47 odorant components tested, including (Z)-3-hexenyl acetate, butyl propionate, ethyl hexanoate, ethyl heptanoate, 1-hexanol, (Z)-3-hexenol, 2-ethyl-1-hexanol, and linalool, by in vitro heterologous expression. Furthermore, electroantennogram responses indicated that the effects of dsOR9-injected females to (Z)-3-hexenyl acetate dramatically decreased. These results suggested that GmolOR9 might be involved in detecting hostplant volatiles. Moreover, (Z)-3-hexenyl acetate might serve as a potential attractant for the biological control of G. molesta.

Grapholita molesta is a global pest of stone and pome fruits. The sensitive olfactory system plays a crucial role in regulating key behavioral activities of insects and G. molesta relies heavily on general odorant receptors (ORs) to detect host-plant volatiles. In this study, three general OR genes from G. molesta (GmolOR12, GmolOR20, and GmolOR21) were identified. Quantitative polymerase chain reaction revealed that GmolORs expression was considerably higher in adults and adult antennae than in any other life stages and body parts, respectively. Moreover, the expression of GmolORs was significantly higher in the antennae of females than in those of males, with a peak in the antennae of 3-days-old adult females. GmolOR20 and GmolOR21 displayed no responses to any of the odorant compounds tested in the Xenopus oocyte system. GmolOR12 was tuned mainly to 5 of the 47 odorant components tested (including decanol, heptanal, octanal, nonanal, and decanal), and the response to aldehydes among the 5 components was the highest. Additionally, they all elicited female and male antennae electroantennogram responses, and the aldehydes elicited the highest response among the 5 components. These results suggested that GmolOR12 in the G. molesta olfactory system plays an important role in sensing aldehydes and that GmolOR12 is involved in sensing host-plant volatiles. These findings provide insight into the possibility of using host-plant volatiles for the control of G. molesta.

Chemosensory proteins (CSPs) belong to a family of small water-soluble proteins that can selectively bind and transport odorant molecules for olfactory communication in insects. To date, their definite physiological functions in olfaction remain controversial when compared with odorant binding proteins (OBPs). To investigate the functions of CSPs in the oriental fruit moth Grapholita molesta , we determined the tissue expression patterns and binding properties of the CSP, GmolCSP8. The key binding sites of GmolCSP8 with a representative ligand were evaluated using molecular flexible docking, site-directed mutagenesis and ligand-binding experiments. Multiple sequence alignment and phylogenetic analysis showed that GmolCSP8 possesses a typical conserved four cysteines motif and shares high sequence identity with some CSP members of other Lepidopteran insects. GmolCSP8 was predominantly expressed in the wings and antennae of both male and female adults and may be involve in contact chemoreception. Recombinant GmolCSP8 (rGmolCSP8) exhibited specific-binding affinities to small aliphatic alcohols (C4–12) and had the strongest binding affinity to 1-hexanol. The three-dimensional structure of GmolCSP8 was constructed using the structure of sgCSP4 as a template. Site-directed mutagenesis and ligand-binding experiments confirmed that Thr27 is the key binding site in GmolCSP8 for 1-hexanol binding, because this residue can form hydrogen bond with the oxygen atom of the hydroxyl group in 1-hexanol, and Leu30 may play an important role in binding to 1-hexanol. We found that pH significantly affected the binding affinities of rGmolCSP8 to ligand, revealing that ligand-binding and -release by this protein is related to a pH-dependent conformational transition. Based on these results, we infer that GmolCSP8 may participate in the recognition and transportation of 1-hexanol and other small aliphatic alcohols.

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