Abstract-It is important to detect and extract the major cortical sulci from brain images, but manually annotating these sulci is a time-consuming task and requires the labeler to follow complex protocols [1], [2]. This paper proposes a learning-based algorithm for automated extraction of the major cortical sulci from magnetic resonance imaging (MRI) volumes and cortical surfaces. Unlike alternative methods for detecting the major cortical sulci, which use a small number of predefined rules based on properties of the cortical surface such as the mean curvature, our approach learns a discriminative model using the probabilistic boosting tree algorithm (PBT) [3]. PBT is a supervised learning approach which selects and combines hundreds of features at different scales, such as curvatures, gradients and shape index. Our method can be applied to either MRI volumes or cortical surfaces. It first outputs a probability map which indicates how likely each voxel lies on a major sulcal curve. Next, it applies dynamic programming to extract the best curve based on the probability map and a shape prior. The algorithm has almost no parameters to tune for extracting different major sulci. It is very fast (it runs in under 1 min per sulcus including the time to compute the discriminative models) due to efficient implementation of the features (e.g., using the integral volume to rapidly compute the responses of 3-D Haar filters). Because the algorithm can be applied to MRI volumes directly, there is no need to perform preprocessing such as tissue segmentation or mapping to a canonical space. The learning aspect of our approach makes the system very flexible and general. For illustration, we use volumes of the right hemisphere with several major cortical sulci manually labeled. The algorithm is tested on two groups of data, including some brains from patients with Williams Syndrome, and the results are very encouraging.Index Terms-Cortical sulci, discriminative models, dynamic programming, learning, magnetic resonance (MR) images, probability boosting tree.
In this paper, we present an efficient and robust algorithm for shape matching, registration, and detection. The task is to geometrically transform a source shape to fit a target shape. The measure of similarity is defined in terms of the amount of transformation required. The shapes are represented by sparse-point or continuous-contour representations depending on the form of the data. We formulate the problem as probabilistic inference using a generative model and the EM algorithm. But this algorithm has problems with initialization and computing the E-step. To address these problems, we define a data-driven technique (discriminative model) which makes use of shape features. This gives a hybrid algorithm which combines the generative and discriminative models. The resulting algorithm is very fast, due to the effectiveness of shape-features for solving correspondence requiring only a few iterations. We demonstrate the effectiveness of the algorithm by testing it on standard datasets, such as MPEG7, for shape matching and by applying it to a range of matching, registration, and foreground/background segmentation problems.
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