November 5, 2007; 10.1073͞pnas.0702843104), the authors wish to add a reference to a paper by A. Shukla et al. (35), in which an intrinsic, nonaromatic fluorescence emission with the same excitation and emission characteristics was observed in different protein crystals and aggregates, upon UV-A excitation, and was attributed to the delocalization of peptide electrons by intra-and/or intermolecular hydrogen bond formation, consistent with the intrinsic blue-green fluorescence we report in amyloid-like nanofibrils. The added reference appears below. Analysis of the x-ray crystal structure of mono-substituted acetylenic thienopyrimidine 6 complexed with the ErbB family enzyme ErbB-4 revealed a covalent bond between the terminal carbon of the acetylene moiety and the sulfhydryl group of Cys-803 at the solvent interface. The identification of this covalent adduct suggested that acetylenic thienopyrimidine 6 and related analogs might also be capable of forming an analogous covalent adduct with EGFR, which has a conserved cysteine (797) near the ATP binding pocket. To test this hypothesis, we treated a truncated, catalytically competent form of EGFR (678 -1020) with a structurally related propargylic amine (8). An investigation of the resulting complex by mass spectrometry revealed the formation of a covalent complex of thienopyrimidine 8 with Cys-797 of EGFR. This finding enabled us to readily assess the irreversibility of various inhibitors and also facilitated a structure-activity relationship understanding of the covalent modifying potential and biological activity of a series of acetylenic thienopyrimidine compounds with potent antitumor activity. Several ErbB family enzyme and cell potent 6-ethynyl thienopyrimidine kinase inhibitors were found to form covalent adducts with EGFR.inhibitors ͉ enzyme ͉ irreversible ͉ thiol ͉ alkylation I nhibition of the ErbB family receptor tyrosine kinases (EGFR, ErbB-2) represents a major advance in the treatment of solid tumors, as demonstrated by the promising clinical activity of gefitinib (1), erlotinib (2), and lapatinib (3) (Fig. 1) (1). These drugs are selective, reversible ATP-competitive EGFR (e.g., 1, 2) or dual EGFR/ErbB-2 inhibitors (3), respectively. An alternative approach for targeting this family of enzymes has been through irreversible alkylation of an ErbB family-conserved cysteine residue (Cys-797 in EGFR, Cys-805 in ErbB-2, and Cys-803 in ErbB-4). i This latter approach led to the discovery of the potent, irreversible agents canertinib (4) and pelitinib (5) (Fig. 1) (2, 3). Both compounds 4 and 5 and other irreversible agents are reported to be in phase II clinical trials (4).To identify potent, efficacious EGFR/ErbB-2 inhibitors structurally distinct from lapatinib, a series of 4-anilino thienopyrimidines containing the fluorobenzyl aniline subunit common to 3 was explored. Optimization of this series on enzyme and cellular assays led to the identification of 6-ethynyl-substituted thieno[3,2-d]pyrimidines and thieno [2,3-d]pyrimidines as represented by the...

Inhibition of mutant IDH1 is being evaluated clinically as a promising treatment option for various cancers with hotspot mutation at Arg. Having identified an allosteric, induced pocket of IDH1, we have explored 3-pyrimidin-4-yl-oxazolidin-2-ones as mutant IDH1 inhibitors for modulation of 2-HG production and potential brain penetration. We report here optimization efforts toward the identification of clinical candidate (), a potent and selective mutant IDH1 inhibitor that has demonstrated brain exposure in rodents. Preclinical characterization of this compound exhibited correlation of 2-HG reduction and efficacy in a patient-derived IDH1 mutant xenograft tumor model. () has progressed into human clinical trials for the treatment of cancers with IDH1 mutation.

High throughput screening and subsequent hit validation identified 4-isopropyl-3-(2-((1-phenylethyl)amino)-pyrimidin-4-yl)oxazolidin-2-one as a potent inhibitor of IDH1 R132H . Synthesis of the four separate stereoisomers identified the (S,S)-diastereomer (IDH125, 1f) as the most potent isomer. This also showed reasonable cellular activity and excellent selectivity vs IDH1 wt . Initial structure−activity relationship exploration identified the key tolerances and potential for optimization. X-ray crystallography identified a functionally relevant allosteric binding site amenable to inhibitors, which can penetrate the blood−brain barrier, and aided rational optimization. Potency improvement and modulation of the physicochemical properties identified (S,S)-oxazolidinone IDH889 (5x) with good exposure and 2-HG inhibitory activity in a mutant IDH1 xenograft mouse model. KEYWORDS: Mutant IDH1 inhibitor, allosteric inhibition, 2-HG, preclinical in vivo activity, 3-pyrimidin-4-yloxazolidin-2-one, chirality-defined potency H otspot heterozygous mutations in human cytoplasmic isocitrate dehydrogenase 1 (IDH1) at Arg 132 (R132*) have been identified in multiple cancer types, including acute myeloid leukemia (AML), glioma, chondrosarcoma, and cholangiocarcinoma. 1 These mutations have been shown to confer a neomorphic catalytic activity to produce high levels of intracellular R-2-hydroxyglutarate (2-HG) and effect downstream epigenetic markers on DNA and proteins. Recent clinical trials in AML patients with a specific inhibitor of IDH1 has shown clinical benefit, confirming the causal link between this genetic mutation, the production of 2-HG, and cancer.11 Efforts herein focused on the identification of compounds that could potentially target all classes of mutant-IDH1 tumors, including those in the brain.The substrate-binding site of mutant IDH1 is highly polar as defined by the amino acids lining the pocket (Figure 1), in addition to the active-site magnesium ion and NADPH cofactor. This suggests a low probability of being able to optimize a compound for potent binding to this site while also fulfilling the criteria most conducive to crossing the blood− brain barrier (BBB).12 It was decided to explore the identification of catalytic inhibitors with different mechanisms of action, which may bind distal to this polar substrate-binding site.High throughput screening was carried out with a NADPH fluorescence-based biochemical assay using IDH1 R132H homodimer protein, and orthogonal biochemical inhibition confirmation using an LCMS readout of 2-HG levels. Compounds 1a and 1b were identified as selective and functional inhibitors of IDH1R132H from this screen. Both 1a and 1b were screened as diastereomeric mixtures at the amine (Table 1, Am), which necessitated the independent synthesis of the four separate stereoisomers in order to determine the chiral preference for ligand binding. Potency was found to be most strongly dependent upon the chirality at the amine center (Am), . Amino acids lining the pocket are highl...

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