BLAST analysis of expressed sequence tags (ESTs) using the coding sequence of a human UDP-galactose:-N-acetylglucosamine -1,3-galactosyltransferase, designated 3Gal-T1, revealed no ESTs with identical sequences but a large number with similarity. Three different sets of overlapping ESTs with sequence similarities to 3Gal-T1 were compiled, and complete coding regions of these genes were obtained. Expression of two of these genes in the Baculo virus system showed that one represented a UDP-galactose:-N-acetylglucosamine -1,3-galactosyltransferase (3Gal-T2) with similar kinetic properties as 3Gal-T1. Another gene represented a UDP-galactose:-N-acetyl-galactosamine -1,3-galactosyltransferase (3Gal-T4) involved in G M1 /G D1 ganglioside synthesis, and this gene was highly similar to a recently reported rat G D1 synthase (Miyazaki, H., Fukumoto, S., Okada, M., Hasegawa, T., and Furukawa, K. (1997) J. Biol. Chem. 272, 24794-24799). Northern analysis of mRNA from human organs with the four homologous cDNA revealed different expression patterns. 3Gal-T1 mRNA was expressed in brain, 3Gal-T2 was expressed in brain and heart, and 3Gal-T3 and -T4 were more widely expressed. The coding regions for each of the four genes were contained in single exons. 3Gal-T2, -T3, and -T4 were localized to 1q31, 3q25, and 6p21.3, respectively, by EST mapping. The results demonstrate the existence of a family of homologous 3-galactosyltransferase genes.