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The mechanical parameters of Cerasus humilis are the basic data for subsequent studies on fruit deformation, damage, and movement characteristics during harvesting and transportation, but these parameters are rarely reported. Relevant mechanical parameters of whole fruit compression are calculated by comparing physical tests and virtual simulations. The orthogonal rotating combined experimental design was used to arrange the simulation tests, with the elastic modulus (E), yield limit (Ey), and tangent modulus (Et) as the influence factors and compression force as the result. Response surface optimization was employed to find the closest test point to the force–deformation curve of the physical test. The parameters of the pulp test point are as follows: E = 0.923 MPa, Ey = 0.0897 MPa, and Et = 0.478 MPa. Results show that the step on the force–deformation curve was not the beginning of the pulp yield, which was substantially earlier than the strain rate at the simulation step. The region of increased stress in the pulp first appeared at the junction with the core due to stress concentration. Combining virtual and physical tests to solve the mechanical parameters of fruits is more suitable than testing the standard pulp sample.