The coding sequence of the cyanobacterium Synechocystis sp. strain PCC 6803 slr0095 gene was cloned and functionally expressed in Escherichia coli. The corresponding enzyme was classified as a cation-and S-adenosyl-L-methionine-dependent O-methyltransferase (SynOMT), consistent with considerable amino acid sequence identities to eukaryotic O-methyltransferases (OMTs). The substrate specificity of SynOMT was similar with those of plant and mammalian CCoAOMT-like proteins accepting a variety of hydroxycinnamic acids and flavonoids as substrates. In contrast to the known mammalian and plant enzymes, which exclusively methylate the meta-hydroxyl position of aromatic di-and trihydroxy systems, Syn-OMT also methylates the para-position of hydroxycinnamic acids like 5-hydroxyferulic and 3,4,5-trihydroxycinnamic acid, resulting in the formation of novel compounds. The x-ray structure of SynOMT indicates that the active site allows for two alternative orientations of the hydroxylated substrates in comparison to the active sites of animal and plant enzymes, consistent with the observed preferred para-methylation and position promiscuity. Lys 3 close to the N terminus of the recombinant protein appears to play a key role in the activity of the enzyme. The possible implications of these results with respect to modifications of precursors of polymers like lignin are discussed.2 (EC 2.1.1) is a common modification in secondary product biosynthesis (1). Sitespecific O-methylation modulates the physiological properties and the chemical reactivity of phenolic compounds and renders them more hydrophobic. Cation-dependent OMTs constitute a small group of low molecular mass (23 to 27 kDa) enzymes (2). In mammals, these enzymes play important roles in the modification of catechol neurotransmitters in the brain or may inactivate potentially bioactive metabolites like quercetin in the liver and kidney (3, 4). They are therefore referred to as catechol OMTs (COMT) and have been investigated as potential targets to cure degenerate brain diseases (5). In plants, caffeoyl-coenzyme A O-methyltransferases (CCoAOMTs), named after their preferred in vitro substrate, in conjunction with a second group of cation-independent caffeic acid OMTs, are crucial for determining the structural integrity of lignin in plant vascular tissues (6, 7). Specific subtypes of CCoAOMT-like proteins also methylate, besides caffeoyl-CoA, other phenylpropanoids, preferentially flavonoids, with vicinal dihydroxy groups (2). The threedimensional structures of eukaryotic animal and plant OMTs known so far are quite similar despite their otherwise low sequence identities, irrespective of the involvement of bivalent cations and substrates. Structural data obtained so far reveal a conserved AdoMet-binding site in all OMTs from the animal and plant kingdom (8 -10). The methyl transfer mechanism proceeds via an S n 2-like transition state and a cation-facilitated deprotonation of one of the two hydroxyl groups.Atomic structures of the cation-dependent catechol OMT from rat ...