Abstract:The present work is aimed at studying the computation of the thermodynamic potentials that describe the stability of anionic surfactant molecules in micellar aggregates. We report a set of molecular dynamics simulations of a sodium octanoate micelle in aqueous solution using the umbrella sampling method along with the Jarzynski equality in order to compute the potential of mean force for the dissociation process of one surfactant molecule from a previously assembled micellar aggregate. The Jarzynski average wa… Show more
“…Surfactant molecules are able to self-assemble above the critical micelle concentration (CMC) into various structures and these kinds of structures are usually used to replicate biological systems [1]. As such, surfactant systems have been the subject of numerous experimental, theoretical and computational studies [2], with various aspects considered, including fission/fusion mechanisms [3][4][5][6], influence of salt [7,8], effect of variations in concentration and temperature [9], etc. In this study, we report the results of atomic scale molecular dynamics (MD) simulation of long chain alkyl sodium pentadecyl sulfonate (SPDS) micelles in the presence of 0.5 M NaCl.…”
Here we report a molecular dynamics simulation on the state of long chain alkyl sulfonate micelle which occurs in the presence of salt. We tracked the formation of a large micelle with a dumbbell-like shape, which has hemispherical end caps with a large radius rather than the middle cylindrical body, where the shape bending angle was around 160 o . The data from chain analysis indicate that the micelle hydrocarbon layer is covered with disordered tails. We also report micelle fission controlled by changes in salt concentration. Overall, the parameters obtained are compared with existing experimental findings.
“…Surfactant molecules are able to self-assemble above the critical micelle concentration (CMC) into various structures and these kinds of structures are usually used to replicate biological systems [1]. As such, surfactant systems have been the subject of numerous experimental, theoretical and computational studies [2], with various aspects considered, including fission/fusion mechanisms [3][4][5][6], influence of salt [7,8], effect of variations in concentration and temperature [9], etc. In this study, we report the results of atomic scale molecular dynamics (MD) simulation of long chain alkyl sodium pentadecyl sulfonate (SPDS) micelles in the presence of 0.5 M NaCl.…”
Here we report a molecular dynamics simulation on the state of long chain alkyl sulfonate micelle which occurs in the presence of salt. We tracked the formation of a large micelle with a dumbbell-like shape, which has hemispherical end caps with a large radius rather than the middle cylindrical body, where the shape bending angle was around 160 o . The data from chain analysis indicate that the micelle hydrocarbon layer is covered with disordered tails. We also report micelle fission controlled by changes in salt concentration. Overall, the parameters obtained are compared with existing experimental findings.
“…For our purpose, selected micelle sizes (including 1,3,8,9,14,15,19,20,24,25,29,30,34,35,39,40,44,45,49,50,54,55,59, 60, 64, 65, 69, 70, 74, 75, 79, 80) were chosen to perform BAR analysis.…”
Section: Peach-bar Analysismentioning
confidence: 99%
“…The addition or removal of a single monomer to or from a micelle can in principle give information on the difference between ΔG i and ΔG i + 1 , or equivalently the equilibrium constant association or dissociation of a single monomer. A few reports have been made of the PMF associated with removing a monomer from a micelle, [35][36][37][38] tions to the affinity of a monomer to a cluster is, however, being counted in the US estimate for that quantity entered in Table 2. The original PEACH-BAR calculations therefore were missing a factor that contributes to the stability of aggregates formed.…”
Section: Comparison With Umbrella Sampling Calculationsmentioning
A new method to extract the free energy of aggregation versus aggregate size from molecular simulation data is proposed and applied to a united atom model of the zwitterionic surfactant dodecyl phosphocholine in water. This system's slow dissociation rate and low critical micelle concentration (CMC of approximately 1-2 mM) make extraction of cluster free energies directly from simulation results using the "partition-enabled analysis of cluster histogram" (PEACH) method impractical. The new approach applies PEACH to a model with weakened attractions between aggregants, which allows sampling of a continuous range of cluster sizes, then recovers the free energy of aggregation under the original fully-attractive force field using the BAR free energy difference method. PEACH-BAR results are compared with free energy differences calculated via umbrella sampling, and are used to make predictions of CMC, average cluster size, and SAXS scattering profiles that are in fair agreement with experiment.
“…For instance, introduction of urea to an aqueous solution 26 or the transference of ions from a hydrophobic to a hydrophilic environment affects the population of different conformers. 27 This brief review shows that the flexibility of both cations and anions is important for the comprehension of the melting point and possible crystalline structures of ILs. However, several questions remain.…”
The low melting point of room temperature ionic liquids is usually explained in terms of the presence of bulky, low-symmetry, and flexible ions, with the first two factors related to the lattice energy while an entropic effect is attributed to the latter. By means of molecular dynamics simulations, the melting points of 1-ethyl-3-methyl-imidazolium hexafluorophosphate and 1-decyl-3-methyl-imidazolium hexafluorophosphate were determined, and the effect of the molecular flexibility over the melting point was explicitly computed by restraining the rotation of dihedral angles in both the solid and the liquid phases. The rotational flexibility over the bond between the ring and the alkyl chain affects the relative ordering of the anions around the cations and results in substantial effects over both the enthalpy and the entropy of melting. For the other dihedral angles of the alkyl group, the contributions are predominantly entropic and an alternating behavior was found. The flexibility of some dihedral angles has negligible effects on the melting point, while others can lead to differences in the melting point as large as 20 K. This alternating behavior is rationalized by the different probabilities of conformation defects in the crystal.
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