The genomes of various Spiroplasma citri strains were digested with several restriction enzymes, and the fragments were analyzed by pulsed-field gel electrophoresis. Polymorphism of the restriction patterns was observed. The genome sizes of the strains obtained when we added the restriction fragment sizes ranged from 1,650 to 1,910 kbp. Physical and genetic maps of 12 strains were constructed by using several DNA probes as genetic markers. The relative positions of mapped loci were conserved in most of the strains; the main differences were differences in the order and number of restriction sites and differences in the sizes of certain fragments. The distribution of viral sequences, which occur at multiple sites in the S. c h i genome and are homologous to the sequences of S. citri virus SpVl strains RSA2B and S102, was also studied.Since the first culture of Spiroplasma citri (38), the helical mollicute that causes stubborn disease of citrus, several hundred isolates of this agent have been obtained. These organisms have been isolated from infected citrus trees and herbaceous hosts and from insect vectors of the spiroplasmas, such as the leafhopper Circulifer haematoceps (15). The major characteristics of S. citri include helical morphology, motility, small genome size, and low genome G + C content (26 mol%).Phylogenetic studies have shown that spiroplasmas, like all other organisms in the class Mollicutes, arose from the phylum of gram-positive bacteria by successive elimination of genomic DNA (46,53,54).Physical and genomic maps of several mollicutes, including S. citri R8A2' (T = type strain), have been published previously (2, 12, 21, 22, 29, 31, 43, 47-50, 55, 56). Polymorphism has been observed among strains of the same species with several organisms, including Mycoplasma mycoides, Mycoplasma hominis, Mycoplasma hyopneumoniae, and Ureaplasma urealyticum (16,22,31,36), suggesting that these organisms belong to a group of prokaryotes that exhibits a high evolution rate, as suggested previously by 16s rRNA sequence data (54).Several previous studies revealed that polymorphism could be found in several S. citri strains isolated from various hosts in different geographical areas; these studies were studies in which the researchers used serology, protein electrophoretic profiles, restriction fragment length polymorphism, and spiralin gene nucleotide sequences (4,5,25). A striking feature of the S. citri genome is that it contains multiple copies of sequences homologous to the spiroplasma virus SpVl sequence (34,35,56) and that the number and distribution of these sequences are variable from one strain to another (34).In order to investigate further the chromosomal heterogeneity of various S. citri strains, we analyzed the genomic DNAs of these organisms by performing restriction enzyme digestion followed by pulsed-field gel electrophoresis (PFGE). Physical and genomic maps of 12 strains were constructed, and the relative positions of restriction sites and genetic markers, including virus-like sequences, were co...