Microfluidic technology has great advantages in the precise manipulation of micro and nano particles, and the collection method of micro and nano particles based on ultrasonic standing waves has attracted much attention for its high efficiency and simplicity of structure. This article proposes a two-stage particle separation channel using ultrasound. In the microfluidic channel, two different sound pressure regions are used to achieve the separation of particles with positive acoustic contrast factors. Through numerical simulation, the performance of three common piezoelectric substrate materials was compared qualitatively and quantitatively, and it was found that the output sound pressure intensity of 128 • YX-LiNbO3 was high and the output was stable. At the same time, the influence of the number of electrode pairs of the interdigital transducer and the electrode voltage on the output sound wave is studied. Finally, 15 pairs of electrode pairs are selected, and the electrode voltages of the two sound pressure regions are 2.0 V and 3.0 V, respectively. After selecting the corresponding parameters, the separation process was numerically simulated, and the separation of three kinds of particles was successfully achieved. This work has laid a certain theoretical foundation for rapid disease diagnosis and real-time monitoring of the environment in practical applications.