Human pregnancy-associated endometrial a2-globulin (a2-PEG) is the major secretory protein product of the endometrium during embryo implantation and the first few weeks of pregnancy. It is a homologue of 8-lactoglobulin, a retinol binding protein, but unlike ig-lactoglobulin it is not found in the mammary gland. The cloning and sequencing of 34 a2-PEG clones has revealed several minor variant forms indicative of alternatively spliced a2-PEG pre-mRNA. These minor forms have also been detected amongs uncloned cDNA after PCR ampfication. Some of these mRNAs would give rise to forms of a2-PEG protein lacking internal sequences, whereas others affect the mRNA sequences on the 3' boundary of the presumed termination codon. Sequences within the cDNA clones are consistent with the existence of splice sites, and together with similarities found between a2-PEG cDNA and ,8-lactoglobulin gene sequences there is good evidence in support of an unusual scheme for the alternative splicing of a2-PEG pre-mRNA involving both alternative 5' splice sites and alternative 3' splice sites. This scheme suggests that the a2-PEG and .3-lactoglobulin genes share a similar structure in at least two regions, and it is likely that 13-lactoglobulin pre-mRNA would show a similar pattern of alternative splicing for one of these regions.