“…Transcriptome sequencing (RNA-Seq) can provide the expression information of thousands of genes in a single experiment and has greatly contributed to the development of functional genomics. With the development of high-throughput sequencing and bioinformatic technologies, CMS-related genes have been identified through the construction of transcriptional regulatory networks, which are related to the tricarboxylic acid (TCA) cycle, oxidative phosphorylation, respiratory electron transport chain, toxic proteins, and carbohydrate metabolism ( Wu et al, 2013 ; Liao et al, 2016 ; Mei et al, 2016 ; Kong et al, 2017a ; Chen et al, 2018 ; Tang et al, 2018 ; Li et al, 2019 , 2021 ; Ning et al, 2019 ; Zheng et al, 2019 ; Zhang et al, 2021 ). Therefore, comparative transcriptome analysis has been widely used to study the molecular mechanisms of CMS in plants, including the red flax CMS line P3A ( Chen et al, 2014 ), the soybean CMS line NJCMS1A ( Li et al, 2015a ), the Welsh onion CMS line 64-2 ( Liu et al, 2016 ), and the cabbage CMS line PM ( Wang et al, 2016 ).…”