The significant problems caused by soilborne pathogens in crop production worldwide include reduced crop performance, decreased yield, and higher production costs. In many parts of the world, methyl bromide was extensively used to control these pathogens before the implementation of the Montreal Protocol—a global agreement to protect the ozone layer. The threats of soilborne disease epidemics in crop production, high cost of chemical fungicides and development of fungicide resistance, climate change, new disease outbreaks and increasing concerns regarding environmental as well as soil health are becoming increasingly evident. These necessitate the use of integrated soilborne disease management strategies for crop production. This article summarizes methods for management of soilborne diseases in crop production which includes the use of sanitation, legal methods, resistant cultivars/varieties and grafting, cropping system, soil solarization, biofumigants, soil amendments, anaerobic soil disinfestation, soil steam sterilization, soil fertility and plant nutrients, soilless culture, chemical control and biological control in a system-based approach. Different methods with their strengths and weaknesses, mode of action and interactions are discussed, concluding with a brief outline of future directions which might lead to the integration of described methods in a system-based approach for more effective management of soilborne diseases.