2020
DOI: 10.1002/qua.26373
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Hierarchical equations of motion in the Libra software package

Abstract: We report the implementation of a hierarchical equations of motion (HEOM) module within the open-source Libra software. It includes the standard and scaled HEOM algorithms for computing the dynamics of open quantum systems interacting with a harmonic bath. The module allows the computing of the evolution of the reduced density matrix, as well as spectral lineshapes. The truncation, filtering, and "update list" schemes, as well as OpenMP parallelization, allow for further computational saving. The package is wr… Show more

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Cited by 9 publications
(9 citation statements)
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“…The last snapshot was used to generate 6 ps adiabatic MD trajectories for all systems in the microcanonical ensemble with the atomic time step of 1 fs at the Γ-point. Finally, the NA-MD simulations were ran using the last 3 ps geometries as the initial conditions for study of nonradiative charge recombination using the Libra package. …”
mentioning
confidence: 99%
“…The last snapshot was used to generate 6 ps adiabatic MD trajectories for all systems in the microcanonical ensemble with the atomic time step of 1 fs at the Γ-point. Finally, the NA-MD simulations were ran using the last 3 ps geometries as the initial conditions for study of nonradiative charge recombination using the Libra package. …”
mentioning
confidence: 99%
“…The couplings g i are described using spectral density function, chosen here to be Drude spectral density: J ( ω ) = π 2 i g i 2 m ω i δ ( ω ω i ) = 2 λ γ ω γ 2 + ω 2 . The dynamics of this particular Hamiltonian can be computed numerically exactly using a method called the hierarchy equation of motion (HEOM). …”
Section: Electronic Density Matrixmentioning
confidence: 99%
“…The nonexponential dynamics and incorrect time scale of decay without decoherence remain even when a thermal bath is included. If a thermal bath is added to the Hamiltonian of eq to simulate the condensed phase, under certain regimes, exact quantum dynamics can be done (using the hierarchical equation of motion in a strong system bath coupling regime), and Marcus theory can be used under certain regimes (weak diabatic coupling).…”
Section: Decoherencementioning
confidence: 99%
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“…This method and the algorithm are well described in Refs. [52][53][54][55][56][57]. Our open-source codes to do these calculations can be found in Ref.…”
Section: Heommentioning
confidence: 99%