The RNase H primer grip of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) contacts the DNA primer strand and positions the template strand near the RNase H active site, influencing RNase H cleavage efficiency and specificity. Sequence alignments show that 6 of the 11 residues that constitute the RNase H primer grip have functional equivalents in murine leukemia virus (MLV) RT. We previously showed that a Y586F substitution in the MLV RNase H primer grip resulted in a 17-fold increase in substitutions within 18 nucleotides of adenine-thymine tracts, which are associated with a bent DNA conformation. To further determine the effects of the MLV RNase H primer grip on replication fidelity and viral replication, we performed additional mutational analysis. Using either -galactosidase (lacZ) or green fluorescent protein (GFP) reporter genes, we found that S557A, A558V, and Q559L substitutions resulted in statistically significant increases in viral mutation rates, ranging from 2.1-to 3.8-fold. DNA sequencing analysis of nonfluorescent GFP clones indicated that the mutations in RNase H primer grip significantly increased the frequency of deletions between the primer-binding site (PBS) and sequences downstream of the PBS. In addition, quantitative real-time PCR analysis of reverse transcription products revealed that the mutant RTs were substantially inefficient in plus-strand DNA transfer relative to the wild-type control. These results indicate that the MLV RNase H primer grip is an important determinant of in vivo fidelity of DNA synthesis and suggest that the mutant RT was unable to copy through the DNA-RNA junction of the minusstrand DNA and the tRNA because of its bent conformation resulting in error-prone plus-strand DNA transfer.Genetic diversity is a hallmark of retroviral populations resulting from a high rate of mutations during viral replication (4,37,39). This genetic variation is of clinical significance because it is the basis for antiviral drug resistance and escape from host immune responses readily exhibited by retroviruses such as human immunodeficiency virus type 1 (HIV-1) (12,21,25,27,35,36). The rapid evolution of retroviruses is also an impediment to the design of broadly effective vaccines against HIV-1 (11, 40). Although host cell DNA polymerases and RNA polymerase II are involved in the replication of retrovirus genomes, error-prone replication by the virally encoded reverse transcriptase (RT) is most likely a major contributor to the high mutation rate of retroviruses (20).The structure of RT and inherent nature of the reverse transcription process likely play an important role in the low fidelity of RT. Unlike most high-fidelity cellular DNA polymerases, RT lacks a classical 3Ј-5Ј exonuclease proofreading activity. Other structural features also known to affect RT fidelity include positioning of the template-primer complex at the polymerase active site that is dictated by contacts with RT residues and the local geometry of the polymerase active site (3,15,44). In addi...