Phylogenetic Study of Mangifera laurina and its Related Species Using cpDNA trnL-F Spacer Markers

Fitmawati,; Hartana, Alex

doi:10.4308/hjb.17.1.9

Cited by 19 publications

(16 citation statements)

References 19 publications

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“…The species of M. laurina had the longest horizontal branch (0.74762) and it also showed the longest genetic distance with other species of Mangifera (Table 3). This supported the statement of Fitmawati and Hartana (2010) that M. laurina was the common ancestor of Mangifera in Indonesia. Mangifera kemanga, M. foetida and Mangifera sp.…”

Section: Phylogenetic Analysis Of Mangiferasupporting

confidence: 87%

“…This finding was similiar to Hou (1978) which stated that M. laurina was the synonym of M. indica. However, Fitmawati and Hartana (2010), also used trnL-F intergenic spacer for Mangifera from Sulawesi, did not agree with that statement and stated that M. laurina was different species from M. Indica, also, M. laurina was the ancestor for M. indica which is the cultivated form of M. laurina. This result also contrasts with the previous study using ITS sequence (Fitmawati et al 2016) which stated that M. odorata has a close relationship with M. foetida.…”

Section: Phylogenetic Analysis Of Mangiferamentioning

confidence: 98%

“…The variation occurs between different species within the same or different genera. Sequences variation found in cpDNA sequences was generally caused by a mutation in a single nucleotide which represents mutation that has happened for a very long period of time (Fitmawati and Hartana 2010).…”

Section: Trnl-f Intergenic Spacer Sequences Analysismentioning

confidence: 99%

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Phylogenetic analysis of Mangifera from central region of Sumatra using trnL-F intergenic spacer

et al. 2017

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Section: Phylogenetic Analysis Of Mangiferasupporting

confidence: 87%

Section: Phylogenetic Analysis Of Mangiferamentioning

confidence: 98%

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Phylogenetic analysis of Mangifera from central region of Sumatra using trnL-F intergenic spacer

et al. 2017

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“…Sequence variations found in cpDNA sequences were generally caused by mutations in a single nucleotide which represents mutation that was present and had happened for a very long period of time (Fitmawati and Hartana 2010). In certain regions, the difference in length sequences of trnL-F was caused by mutations (Borsch et al 2003), although the amount of change in this sequence was very small compared to the changes in the core genome, but was able to provide important information in describing the process of evolution because cpDNA was inherited maternally or uniparentally where the changes in the nucleotide took place for a very long time (Hancock 2003), in contrast to the changes on nucleotide base occurred in the core of DNA which were recombination of both parents.…”

Section: Resultsmentioning

confidence: 99%

Phylogenetic analysis of Indonesian gandaria (Bouea) using molecular markers of cpDNA trnL-F intergenic spacer

et al. 2017

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Abstract. Harsono T, Pasaribu N, Sobir, Fitmawati, Prasetya E. 2017. Phylogenetic analysis of Indonesian gandaria (Bouea) using molecular markers of cpDNA . Genus Bouea is a member of the Family Anacardiaceae which is widespread in Malesia region. Genus Bouea consists of two types, namely, B. oppositifolia (Roxb.) Adelb. and B. macrophylla Griffit. This study aims to uncover the genetic diversity of Bouea in Indonesia based on molecular markers of cpDNA trnL-F intergenic spacer. The samples of genetic material analyzed are 7 accessions of B. oppositifolia and 8 accessions of B. macrophylla coming from the collection of the Bogor Botanical Gardens and the field exploration activity in Sumatra, Java, Kalimantan and Ambon, and Anacardium occidentale and Mangifera indica are also used as an out-group comparator. Based on phylogenetic analysis using the maximum parsimony and neighbor-joining method, genus Bouea is a monophyletic group or is derived from the same ancestor. Bouea derived from Gunung Tua, North Sumatra, has the longest branch and showed up earlier than the other sample so it can be considered that the ancestor of genus Bouea. B. oppositifolia has branches longer and show up early so it can be considered the ancestor of B. macrophylla. Both types of genera Bouea grouped separately in the phylogenetic tree and supports grouping types in genera Bouea. The results of phylogenetic tree construction do not indicate a geographical grouping of accession. Based on the phylogenetic tree, genus Bouea has a closer relationship with Anacardium occidentale compared with Mangifera indica. The results showed that the markers cpDNA trnL-F intergenic spacer effectively used to determine relationship in genus Bouea.

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“…(Vijeberg and Bachmann 1999). Another research about the use of trnL-F region in land plants and suitable to provide a phylogenetic information in Junacaeae (Drabkova 2004) and Mangifera had been conducted by Fitmawati and Hartana (2010) for Mangifera laurina and related species and by Dinesh et al (2015) for Mangifera indica relatives. But for mango Sumatra, especially in Northern Sumatra, has not been done yet.…”

Section: Introductionmentioning

confidence: 99%

Herpetofauna community establishment on the micro habitat as a result of land mines fragmentation in East Kalimantan, Indonesia

Muslim

2017

Biodiversitas

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Abstract. Harahap SP, Fitmawati, Sofiyanti N. 2017. Short Communication: Phylogenetic analysis of mango (Mangifera) in Northern Sumatra based on gene sequences of cpDNA trnL-F intergenic spacer. Biodiversitas 18: 715-719. Northern Sumatra is an area with geographical variation. The environmental factors are affected on character plasticity such as found in Anacardiaceae family especially Mangifera genus. The character plasticity of Mangifera members raises a problem in determining clear boundaries between species based on morphological character. Therefore, a molecular approach is necessary to provide a specific character among Mangifera species. This study aimed to reconstruct the phylogeny among Mangifera members in Northern Sumatra based on the sequences of trnL-F intergenic spacer. All of the sequences were aligned by using Clustal W and Cladogram was reconstructed by using PAUP by Maximum Parsimony (MP) and Neighbour-Joining (NJ) methods. The MP cladogram produced two in groups i.e., clade I consist of M. odorata 1 , M. odorata 2 , M. laurina 1 , M. laurina 2 , M. indica, M. zeylanica, M. quadrifida and Mangifera sp. and clade II consisted of M. foetida 1 and M. foetida 2 . Based on the NJ method, it was obtained M. laurina 2 which had the highest genetic distance among other members of Mangifera. The trnL-F intergenic spacer with a low sequences variation indicated that this region was highly conserved and had a low evolution rate in Mangifera.

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Phylogenetic Study of Mangifera laurina and its Related Species Using cpDNA trnL-F Spacer Markers

Cited by 19 publications

References 19 publications

Phylogenetic analysis of Mangifera from central region of Sumatra using trnL-F intergenic spacer

Phylogenetic analysis of Mangifera from central region of Sumatra using trnL-F intergenic spacer

Phylogenetic analysis of Indonesian gandaria (Bouea) using molecular markers of cpDNA trnL-F intergenic spacer

Herpetofauna community establishment on the micro habitat as a result of land mines fragmentation in East Kalimantan, Indonesia

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