“…Based on the results of the KEGG, the PPI, and lncRNA–mRNA co-expression, the 9 mRNAs ( Fgf2 , Id2 , Id3 , Lhx1 , Smad7 , Tcf7 , Wnt1 , Wnt11 , and Klf10 ) and 3 lncRNAs (87,211.1, 87,189.1, and 86,888.1) were selected as representative genes for RT-qPCR validation as these genes are involved in the dental cell proliferation and differentiation as well as tooth development and formation induced by Bmp2 signaling ( Tsuboi et al, 2003 ; Koizumi et al, 2013 ; Sternberg et al, 2013 ; Chen et al, 2016 ; Graf et al, 2016 ; Wu et al, 2016 ; Li et al, 2019 ; Liu et al, 2019 ; Qin et al, 2019 ; Nottmeier et al, 2021 ) and three novel lncRNAs co-expressed with those mRNAs in the dental papilla cells. Our study demonstrated that the validated 9 mRNAs and 2 lncRNAs by RT-qPCR were consistent with the results of the RNA-seq, and the PCC method can be used to predict co-expression networks between mRNAs and lncRNAs.…”