Substitutionally inert metal-containing compounds provide new opportunities as structurally diverse and unique scaffolds for the design of protein binders. This review cites progress in this area by highlighting the use of metal complexes, including truly organometallic compounds, as inhibitors for enzymes of biological interest, such as esterases, proteases, and protein kinases. A common theme in all discussed examples is the use of the metal center as an anchor for the 3D display of organic ligands. While the metal center does not engage in any direct contacts to protein residues, it is the structural orientation of the ligands into previously unaccessible architectures that make metal complexes emerging candidates for bioactive agents with unique properties.